Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10024647m |
Family | PL4 |
Protein Properties | Length: 646 Molecular Weight: 74053.4 Isoelectric Point: 4.934 |
Chromosome | Chromosome/Scaffold: 1 Start: 6658368 End: 6661537 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 5 | 623 | 0 |
GSVRLDVKENHVVMNNGIVEVTISKPDGFVTGISYHGVNNLLESHNEDYDRGYWDLVWSEEGTPGTTGKSERIKGKSFEVVVENEEMVEISFTRRWDSSL QDKIAPINVDKRFIMRKNVTGFYSYAIFEHLAEWPAFNLPQTRIVYKLRKDKFRYMAIADNRQRKMPLPEDRLGKRGRPLAYPEAVLLVHPVEEEFKGEV DDKYEYSCENKDLKVHGWISNSLDLGCWQIIPSNEFRSGGLSKQNLTSHVGPISLAMFISAHYAGEDMVMKVKAGESWKKVFGPVFTYLNCLPDQTSDPL SLWQDAKNQMLIEVQSWPYDFPASEDFALSNKRGCISGRLLVRDKSLSDELLPANGAFVGLAPPGEVGSWQTESKGYQFWTEADADGYFEINNIREGEYN LNAYVTEWIGDYQYEKLINITAGCDIDVGNIVYEPPRDGPTVWEIGIPDRSAAEFFVPDPNPKYINKLYIDHPDRFRQYGLWERYTELYPKEDLVFTIGV SDYKKDWFFAHVTRKLNDDTYQKTTWQIKFKLEKVQKNSTYKLRIALATANVAELQVRMNEEDSEKSCLFTTGVIGHDNTIARHGIHGIYRLYNVDVPSE KLVEGDNTLFLTQAITTTG |
Full Sequence |
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Protein Sequence Length: 646 Download |
MSDQGSVRLD VKENHVVMNN GIVEVTISKP DGFVTGISYH GVNNLLESHN EDYDRGYWDL 60 VWSEEGTPGT TGKSERIKGK SFEVVVENEE MVEISFTRRW DSSLQDKIAP INVDKRFIMR 120 KNVTGFYSYA IFEHLAEWPA FNLPQTRIVY KLRKDKFRYM AIADNRQRKM PLPEDRLGKR 180 GRPLAYPEAV LLVHPVEEEF KGEVDDKYEY SCENKDLKVH GWISNSLDLG CWQIIPSNEF 240 RSGGLSKQNL TSHVGPISLA MFISAHYAGE DMVMKVKAGE SWKKVFGPVF TYLNCLPDQT 300 SDPLSLWQDA KNQMLIEVQS WPYDFPASED FALSNKRGCI SGRLLVRDKS LSDELLPANG 360 AFVGLAPPGE VGSWQTESKG YQFWTEADAD GYFEINNIRE GEYNLNAYVT EWIGDYQYEK 420 LINITAGCDI DVGNIVYEPP RDGPTVWEIG IPDRSAAEFF VPDPNPKYIN KLYIDHPDRF 480 RQYGLWERYT ELYPKEDLVF TIGVSDYKKD WFFAHVTRKL NDDTYQKTTW QIKFKLEKVQ 540 KNSTYKLRIA LATANVAELQ VRMNEEDSEK SCLFTTGVIG HDNTIARHGI HGIYRLYNVD 600 VPSEKLVEGD NTLFLTQAIT TTGAFNGLMY DYIRLEEPFL DSNFH* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 2.0e-31 | 336 | 435 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 8.0e-52 | 447 | 636 | 192 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 7.0e-72 | 14 | 295 | 285 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 4.0e-89 | 8 | 204 | 197 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL15345.1 | 0 | 160 | 645 | 1 | 487 | AT4g24430/T22A6_260 [Arabidopsis thaliana] |
GenBank | AAU90065.1 | 0 | 160 | 645 | 1 | 487 | At4g24430 [Arabidopsis thaliana] |
RefSeq | NP_567703.4 | 0 | 1 | 645 | 1 | 646 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002527353.1 | 0 | 1 | 638 | 1 | 633 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 1 | 638 | 1 | 634 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FD941014 | 257 | 388 | 644 | 0 |
CD813831 | 254 | 2 | 255 | 0 |
DY293973 | 332 | 7 | 336 | 0 |
FY792769 | 270 | 338 | 607 | 0 |
FC896579 | 284 | 70 | 351 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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