| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10025011m |
| Family | GH28 |
| Protein Properties | Length: 494 Molecular Weight: 54376.6 Isoelectric Point: 6.4048 |
| Chromosome | Chromosome/Scaffold: 1 Start: 7117813 End: 7120874 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 97 | 444 | 0 |
| DHGGSLLFVPAGRWLTGSFNLTSHFTLFLHRDAVLLASQEESDYEVIEPLPSYGRGRDTDGGRFISLLFGLNLTDVVITGENGTIDGQGEPWWGKFKRGE LKYTRPYLIEIMHSDGIQISNLTFLNSPSWHIHPVYSRNIVIQGLTILAPVTVPNTDGINPDSCTNTRIEDCYIVSGDDCIAVKSGWDQYGISYGMPTKQ LLIRRLTCISPDSAVIALGSEMSGGIEDVRAEDIVAINSESGIRIKTAIGRGGYVKDVYVRGMTMKTMKYVFWMTGSYGSHPDEHYDPKALPVIQNINYQ DMVAENVTMPAQLAGISGDQFTGICISNVTITLSKKPKKVLWNCTDVS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 494 Download |
| MRTFLSTVGF SLLLLLSHEG GFIGAADAEH NLRATDFHNH RHRRHHGHRR GEEFEYSAVS 60 CRAYSASLDE FGAVGDGVTS NTAAFRDAVS QLSRFADHGG SLLFVPAGRW LTGSFNLTSH 120 FTLFLHRDAV LLASQEESDY EVIEPLPSYG RGRDTDGGRF ISLLFGLNLT DVVITGENGT 180 IDGQGEPWWG KFKRGELKYT RPYLIEIMHS DGIQISNLTF LNSPSWHIHP VYSRNIVIQG 240 LTILAPVTVP NTDGINPDSC TNTRIEDCYI VSGDDCIAVK SGWDQYGISY GMPTKQLLIR 300 RLTCISPDSA VIALGSEMSG GIEDVRAEDI VAINSESGIR IKTAIGRGGY VKDVYVRGMT 360 MKTMKYVFWM TGSYGSHPDE HYDPKALPVI QNINYQDMVA ENVTMPAQLA GISGDQFTGI 420 CISNVTITLS KKPKKVLWNC TDVSGFTSGV TPEPCQLLPE KQPGTVVPCN FPESPIPIEE 480 VKLQRCSSRR RNM* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 5.0e-17 | 70 | 455 | 418 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 4.0e-22 | 65 | 404 | 352 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 3.0e-25 | 64 | 365 | 315 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-28 | 166 | 443 | 289 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-55 | 55 | 362 | 331 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC91278.1 | 0 | 1 | 493 | 1 | 494 | glycoside hydrolase family 28 protein [Capsella rubella] |
| RefSeq | NP_194081.1 | 0 | 3 | 493 | 2 | 495 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002278930.1 | 0 | 48 | 487 | 35 | 474 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002299511.1 | 0 | 50 | 492 | 37 | 479 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509850.1 | 0 | 54 | 491 | 41 | 478 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 9.94922e-44 | 65 | 431 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 9.94922e-44 | 65 | 431 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 9.94922e-44 | 65 | 431 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 9.94922e-44 | 65 | 431 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 5e-16 | 110 | 401 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
