| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10025100m |
| Family | GH28 |
| Protein Properties | Length: 473 Molecular Weight: 51875.5 Isoelectric Point: 8.1679 |
| Chromosome | Chromosome/Scaffold: 1 Start: 2771574 End: 2774258 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 103 | 448 | 0 |
| EGGVQLNVPSGTWLSGSFNLTSNFTLFLERGALILGSKDPDEWPIIEPLPSYGRGRERPGGRHISLIHGDNLTNVVITGENGTIDGQGKMWWELWWNRTL VHTRGHLIEIKNSHNILISNLTLRNSPFWTIHPVYCSNVVITNMTILAPMNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDQYGMAMARPSSNI IIRRISGTTRTCSGVGVGSEMSGGIFNITVEDIHVWDSAAGLRIKTDKGRGGYISNITIRNVLLEKVKVPIRFSRGSNDHPDDKWDPKAMPRVKGIYISN VVSLNSRKAPMLLGVEGALFQDICLRNVTLLGLPESEKWKCKDVSG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 473 Download |
| MESEKPTVLS SMTRPSWAFL LLVFTVLAIL SHQISSNSFL PLWIPTSLPL HDPVSCSGFF 60 LHDPSPRRIV MSITDFGGVG DGKTSNTAAF RRAVRHLQGF AAEGGVQLNV PSGTWLSGSF 120 NLTSNFTLFL ERGALILGSK DPDEWPIIEP LPSYGRGRER PGGRHISLIH GDNLTNVVIT 180 GENGTIDGQG KMWWELWWNR TLVHTRGHLI EIKNSHNILI SNLTLRNSPF WTIHPVYCSN 240 VVITNMTILA PMNAPNTDGI DPDSSTNVCI EDCYIESGDD LVAVKSGWDQ YGMAMARPSS 300 NIIIRRISGT TRTCSGVGVG SEMSGGIFNI TVEDIHVWDS AAGLRIKTDK GRGGYISNIT 360 IRNVLLEKVK VPIRFSRGSN DHPDDKWDPK AMPRVKGIYI SNVVSLNSRK APMLLGVEGA 420 LFQDICLRNV TLLGLPESEK WKCKDVSGYA SDVLPLACPQ LLQKKGSITQ CR* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 4.0e-19 | 20 | 373 | 366 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 7.0e-25 | 71 | 434 | 377 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 9.0e-27 | 71 | 470 | 423 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-31 | 169 | 446 | 285 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 4.0e-53 | 70 | 383 | 336 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN76963.1 | 0 | 9 | 468 | 1 | 463 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI37530.1 | 0 | 1 | 461 | 1 | 467 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_195070.2 | 0 | 1 | 471 | 1 | 472 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002274138.1 | 0 | 1 | 461 | 1 | 467 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002310517.1 | 0 | 55 | 461 | 20 | 425 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2.00386e-43 | 71 | 434 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2.00386e-43 | 71 | 434 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2.00386e-43 | 71 | 434 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2.00386e-43 | 71 | 434 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 8e-26 | 87 | 447 | 26 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
