Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10025189m |
Family | GH28 |
Protein Properties | Length: 450 Molecular Weight: 49220 Isoelectric Point: 9.0951 |
Chromosome | Chromosome/Scaffold: 1 Start: 6921112 End: 6924288 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 77 | 421 | 0 |
RRGGTLLYIPPGVFLTESFNLTSHMTLYLARGAVIRAVQDTWNWPLIDALPSYGRGRELPGGRYMSFIHGDGLRDVVITGQNGTIDGQGEVWWNMWRSRT LKFTRPNLIELKNSKEIIISNVIFQNSPFWNIHPVYCSDVVIHHVTILAPQDSPNTDGIDADSSFNVCIEDSYISTGDDLVAIKSGWDEYGIAYGRPSSN ITIRRITGSSPFAGIAIGSETSGGIKNIVAEHITLFNMGVGVNIKTNIGRGGYIKNIRISNVYVENARYGIKLAGDTGDHPDAYYNPNALPIVKGIHIKN IWGVNVQNAGSIRGLKGSPFTGICLSEINLHGSLNSYRTWKCSDV |
Full Sequence |
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Protein Sequence Length: 450 Download |
MWRLSASILL FSCLFVSFLA VSSSAFGDSE ATCSGIVPLR YRKDKISITD FGGVGDGRKV 60 NTKAFRAAIY RIQHLKRRGG TLLYIPPGVF LTESFNLTSH MTLYLARGAV IRAVQDTWNW 120 PLIDALPSYG RGRELPGGRY MSFIHGDGLR DVVITGQNGT IDGQGEVWWN MWRSRTLKFT 180 RPNLIELKNS KEIIISNVIF QNSPFWNIHP VYCSDVVIHH VTILAPQDSP NTDGIDADSS 240 FNVCIEDSYI STGDDLVAIK SGWDEYGIAY GRPSSNITIR RITGSSPFAG IAIGSETSGG 300 IKNIVAEHIT LFNMGVGVNI KTNIGRGGYI KNIRISNVYV ENARYGIKLA GDTGDHPDAY 360 YNPNALPIVK GIHIKNIWGV NVQNAGSIRG LKGSPFTGIC LSEINLHGSL NSYRTWKCSD 420 VIGTSLKVSP WPCSELRTTG GSYSCSSTF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 4.0e-23 | 40 | 449 | 437 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 3.0e-23 | 44 | 342 | 308 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-28 | 46 | 408 | 374 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 5.0e-33 | 143 | 421 | 285 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 7.0e-51 | 47 | 343 | 321 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 1 | 449 | 1 | 444 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 8 | 447 | 6 | 445 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 1 | 449 | 1 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002304552.1 | 0 | 39 | 449 | 1 | 412 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509949.1 | 0 | 32 | 446 | 28 | 443 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 8.00001e-41 | 45 | 409 | 27 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 8.00001e-41 | 45 | 409 | 27 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 8.00001e-41 | 45 | 409 | 27 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 8.00001e-41 | 45 | 409 | 27 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 3e-19 | 89 | 342 | 51 | 303 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |