| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10027030m |
| Family | GH28 |
| Protein Properties | Length: 394 Molecular Weight: 42616.3 Isoelectric Point: 9.9977 |
| Chromosome | Chromosome/Scaffold: 1 Start: 9587201 End: 9589255 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 38 | 379 | 0 |
| ACKSSSSSVDLIIPRGEFSVGPLRFSGPCTNVSNLTVRVKASTDLSKYRSGGGWIEFRWINGLTLTGGGTFDGQGAVAWPFNNCTTDSNCKLLPTSLKFV GMNRTVVRRISSVNSKFFHMALVECRDFKGTRLNITAPSDSPNTDGIHIERSSNVYFSRSHIATGDDCVSIGQGNSQITITSIKCGPGHGISVGSLGRYP NEKDVKGLVVRDCKMSGTTNGIRIKTWANSPGLSAATNMTFQNIVMKNVTNPIIIDQSYCPFSSCTSNVPSKVKLSDIYFKNIRGTSSSRVAVQLHCSRG IPCKKVFLENVHLYLSSSGGGIGENQSRNRGSEAVSSSCRYV | |||
| Full Sequence |
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| Protein Sequence Length: 394 Download |
| VRNIDKSSVL IVNVHSFGAR ANDHRDHTKA FEAAWDKACK SSSSSVDLII PRGEFSVGPL 60 RFSGPCTNVS NLTVRVKAST DLSKYRSGGG WIEFRWINGL TLTGGGTFDG QGAVAWPFNN 120 CTTDSNCKLL PTSLKFVGMN RTVVRRISSV NSKFFHMALV ECRDFKGTRL NITAPSDSPN 180 TDGIHIERSS NVYFSRSHIA TGDDCVSIGQ GNSQITITSI KCGPGHGISV GSLGRYPNEK 240 DVKGLVVRDC KMSGTTNGIR IKTWANSPGL SAATNMTFQN IVMKNVTNPI IIDQSYCPFS 300 SCTSNVPSKV KLSDIYFKNI RGTSSSRVAV QLHCSRGIPC KKVFLENVHL YLSSSGGGIG 360 ENQSRNRGSE AVSSSCRYVR ARYIGTQIPP PCH* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 3.0e-72 | 3 | 392 | 392 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-76 | 12 | 350 | 346 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 5.0e-77 | 2 | 392 | 400 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-90 | 41 | 350 | 312 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 0 | 4 | 393 | 390 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA16789.1 | 0 | 30 | 393 | 1 | 362 | polygalacturonase-like protein [Arabidopsis thaliana] |
| EMBL | CBI37725.1 | 0 | 11 | 392 | 52 | 387 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_193552.1 | 0 | 4 | 393 | 27 | 414 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002279959.1 | 0 | 11 | 392 | 52 | 419 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312795.1 | 0 | 8 | 392 | 39 | 409 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-26 | 104 | 350 | 115 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.00000000000001 | 180 | 337 | 152 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000000001 | 180 | 337 | 152 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.00000000000001 | 180 | 337 | 152 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.00000000000001 | 180 | 337 | 152 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DR944704 | 241 | 152 | 392 | 0 |
| DR933566 | 209 | 142 | 350 | 0 |
| FL808112 | 257 | 49 | 302 | 0 |
| DT736437 | 256 | 13 | 264 | 0 |
| DR938457 | 237 | 156 | 392 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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