y
Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10027081m |
Family | PL4 |
Protein Properties | Length: 679 Molecular Weight: 77252.4 Isoelectric Point: 9.7329 |
Chromosome | Chromosome/Scaffold: 1 Start: 782734 End: 787194 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 58 | 657 | 0 |
LVVVDNGIIQVTFSNPSGLITGVKYNGFDNVLNDQIKNRGYWDVVWYEPGQKPLTDFLIGEKFDIINQTSEHVEVSFSRTWKISQRGSVAPLNVDKRYII RSGVSGVHMYAVLERLKGWPEVNMDQTRIVFKLNTTKFDFMALSDSRQKIMPSEEDRDVTNGNASPLAYKEAVRLIKPKNYILKGQVDDKYMYSMEDKDN KVHGWISSDPRVGLWMITPSDKFRVCGPVKQDLTSHLGPTILSMFTSTHYVGKDMDTTYTSKEPWKKVFGPVFVYLNSATSPNLLWTDAKRQMVAEVQSW PYDFVKSVDYPLRHQRGTVKGQFFVMDRYISKSKLFGESAFVGLAIPGEVGSWQTENKGYQFWTRADKVGMFTITNVRPGKYSLYAWVSGFIGDYKYERD ITITPGMEINVGTIVYEAPRNGPTLWEIGEPDRTAAEFYIPDPDPSLLTKLYLNSSNPSQDKFRQYGLWDRYSVLYPRNDLIYIAGVNDYKKDWFYAHVT RDAGNGTFHETTWQIVFHLKTVNQTGNYTLRMALAAATTADLFVRANEANSEPIFTTGFIGRDNAIARHGVHGLYRLYNINIQGKLLRVGNNTILLTQNR |
Full Sequence |
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Protein Sequence Length: 679 Download |
MKNRAMGIKA GRVMIHIFVL IFLLQYVHSR TSRNKLNIAK AGQKLVSLVT LKKDIPNLVV 60 VDNGIIQVTF SNPSGLITGV KYNGFDNVLN DQIKNRGYWD VVWYEPGQKP LTDFLIGEKF 120 DIINQTSEHV EVSFSRTWKI SQRGSVAPLN VDKRYIIRSG VSGVHMYAVL ERLKGWPEVN 180 MDQTRIVFKL NTTKFDFMAL SDSRQKIMPS EEDRDVTNGN ASPLAYKEAV RLIKPKNYIL 240 KGQVDDKYMY SMEDKDNKVH GWISSDPRVG LWMITPSDKF RVCGPVKQDL TSHLGPTILS 300 MFTSTHYVGK DMDTTYTSKE PWKKVFGPVF VYLNSATSPN LLWTDAKRQM VAEVQSWPYD 360 FVKSVDYPLR HQRGTVKGQF FVMDRYISKS KLFGESAFVG LAIPGEVGSW QTENKGYQFW 420 TRADKVGMFT ITNVRPGKYS LYAWVSGFIG DYKYERDITI TPGMEINVGT IVYEAPRNGP 480 TLWEIGEPDR TAAEFYIPDP DPSLLTKLYL NSSNPSQDKF RQYGLWDRYS VLYPRNDLIY 540 IAGVNDYKKD WFYAHVTRDA GNGTFHETTW QIVFHLKTVN QTGNYTLRMA LAAATTADLF 600 VRANEANSEP IFTTGFIGRD NAIARHGVHG LYRLYNINIQ GKLLRVGNNT ILLTQNRITS 660 SVIGVMYDYL RLEGPSGV* 720 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 3.0e-31 | 372 | 471 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 8.0e-34 | 483 | 673 | 193 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 6.0e-69 | 59 | 339 | 283 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-88 | 20 | 244 | 227 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAS99719.1 | 0 | 1 | 675 | 1 | 674 | At2g22620 [Arabidopsis thaliana] |
RefSeq | NP_179847.1 | 0 | 1 | 675 | 1 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | NP_195508.2 | 0 | 1 | 678 | 1 | 678 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 0 | 59 | 677 | 57 | 673 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527245.1 | 0 | 58 | 676 | 1 | 619 | lyase, putative [Ricinus communis] |