| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10027416m |
| Family | GH28 |
| Protein Properties | Length: 404 Molecular Weight: 43946 Isoelectric Point: 8.4144 |
| Chromosome | Chromosome/Scaffold: 1 Start: 8568769 End: 8572508 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 56 | 390 | 0 |
| SACSRINGNSKIYVPKGTFYLGGIEFLGPCKNKIEFVIDGTLLAPANPKDIKQDTWINFRYIDNLSIYGKGTLDGQGKQSWPFNDCHKNTSCPQLAKTMG FAFVNDSSVKGITSLNSKMAHFNFFQVHHFNITEVNITAPGDSPNTDGIKIGYSSNMQISNTQIGTGDDCIAILPGTTNLDISNVTCGPGHGISVGSLGK NKAEKDVNGLTVSDTIFNGTSNGIRIKTWESSASNILVSKFVYENIQMINVGIPINIDQKYCPYPPCEKKGDSHVQIQDVELQNIYGTSTTKTAVSLQCS KSVPCKNIHLIDIDLKYNGTNEQGPAIAMCQNVDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 404 Download |
| MACIVFGFKA LCFSFLFVAV ASRPTAWKKV FNVQRYGATS DGKTDNVNAF KTVWKSACSR 60 INGNSKIYVP KGTFYLGGIE FLGPCKNKIE FVIDGTLLAP ANPKDIKQDT WINFRYIDNL 120 SIYGKGTLDG QGKQSWPFND CHKNTSCPQL AKTMGFAFVN DSSVKGITSL NSKMAHFNFF 180 QVHHFNITEV NITAPGDSPN TDGIKIGYSS NMQISNTQIG TGDDCIAILP GTTNLDISNV 240 TCGPGHGISV GSLGKNKAEK DVNGLTVSDT IFNGTSNGIR IKTWESSASN ILVSKFVYEN 300 IQMINVGIPI NIDQKYCPYP PCEKKGDSHV QIQDVELQNI YGTSTTKTAV SLQCSKSVPC 360 KNIHLIDIDL KYNGTNEQGP AIAMCQNVDG YARGKKFPPN CLD* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-81 | 32 | 398 | 376 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 6.0e-84 | 10 | 403 | 398 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 4.0e-84 | 3 | 402 | 408 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-93 | 58 | 388 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 3.0e-124 | 31 | 401 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_175003.1 | 0 | 1 | 403 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_175004.1 | 0 | 1 | 395 | 1 | 396 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_179147.1 | 0 | 1 | 403 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_179148.1 | 0 | 1 | 398 | 1 | 399 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_179149.2 | 0 | 1 | 403 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 5e-20 | 109 | 365 | 100 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.000000000000004 | 128 | 388 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000000004 | 128 | 388 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000000000004 | 128 | 388 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.000000000000004 | 128 | 388 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
