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Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10027434m |
Family | GH28 |
Protein Properties | Length: 346 Molecular Weight: 37191.1 Isoelectric Point: 6.7115 |
Chromosome | Chromosome/Scaffold: 1 Start: 3263226 End: 3264955 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 7 | 279 | 0 |
SKKSEYWLCFEKVTGLVLNGSGVLNTHGGNWWSSVEVYSRPEAVRFFACNDIIYNGITQMDSPKNHISVLNCVNATISNLRLIAPANSPNTDGIDICLSH NIHIFDSSIETGDDCVAINGSSYDINITRVACGPGHGISIGSLGKGGAMDTVQNVNVRDCTFSGTANGARIKTWPGGRGFAKNILYENITLINAKFPIII DQHYCDGGSCKPAGGTAVKVSDVTFKYFKGTCSGESDAIKLDCDKNVGCDNIVMEHINITSSSPKTLLHAFCQ |
Full Sequence |
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Protein Sequence Length: 346 Download |
MVKGWGSKKS EYWLCFEKVT GLVLNGSGVL NTHGGNWWSS VEVYSRPEAV RFFACNDIIY 60 NGITQMDSPK NHISVLNCVN ATISNLRLIA PANSPNTDGI DICLSHNIHI FDSSIETGDD 120 CVAINGSSYD INITRVACGP GHGISIGSLG KGGAMDTVQN VNVRDCTFSG TANGARIKTW 180 PGGRGFAKNI LYENITLINA KFPIIIDQHY CDGGSCKPAG GTAVKVSDVT FKYFKGTCSG 240 ESDAIKLDCD KNVGCDNIVM EHINITSSSP KTLLHAFCQF AHVISRFVSI DIKCDAHDHK 300 DPQPPSPFPA LAPSTPYAKP PSPDAQPPTP IAQPPLFSFP FLYFD* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 4.0e-65 | 13 | 269 | 265 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 3.0e-71 | 5 | 286 | 291 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-73 | 5 | 269 | 267 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-79 | 6 | 274 | 277 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03010 | PLN03010 | 9.0e-90 | 2 | 266 | 265 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_194963.2 | 0 | 5 | 212 | 113 | 324 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_194964.2 | 0 | 1 | 337 | 1 | 336 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_680757.1 | 0 | 1 | 341 | 62 | 407 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324855.1 | 0 | 2 | 294 | 103 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 4 | 294 | 103 | 391 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-22 | 29 | 247 | 79 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-22 | 29 | 247 | 79 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-22 | 29 | 247 | 79 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-22 | 29 | 247 | 79 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-22 | 29 | 247 | 79 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CV536748 | 253 | 2 | 249 | 0 |
EY474520 | 233 | 47 | 279 | 0 |
GT141262 | 217 | 63 | 279 | 0 |
FS942787 | 274 | 8 | 271 | 0 |
CK252914 | 227 | 45 | 270 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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