| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10027449m |
| Family | GH28 |
| Protein Properties | Length: 368 Molecular Weight: 40028 Isoelectric Point: 6.4991 |
| Chromosome | Chromosome/Scaffold: 1 Start: 3266860 End: 3270104 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 15 | 337 | 0 |
| RSVGSALVIHENETYTIQPQLFKGPCVSSYIHIQIDGKIEAPKAYGEWKNTKNIDSWLCFKDVEGLFLNGSGTLHPHGEAWWPAVSHSNRPRTISFKACN DIIYNGLTQMNSPRIHISIVACNNATLSNLHLIAPEDSPNTDGIDISMSHNIHVLDSSIQTGDDCIAVNGGRGGSSDINITRVACGPGHGISIGSMGKNG EADIVENVNVRNCSFLGTQNGARIKTWHGGGGLAKNILYEHITLTDTKYPIIIDQHYSNGGDVEGNAVKVSNVTFRHFEGTSASKIAIKLDCDETERCHN IVMEHINITSSSPVKNLTTYCKF | |||
| Full Sequence |
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| Protein Sequence Length: 368 Download |
| MTFQEAWKGL CEDERSVGSA LVIHENETYT IQPQLFKGPC VSSYIHIQID GKIEAPKAYG 60 EWKNTKNIDS WLCFKDVEGL FLNGSGTLHP HGEAWWPAVS HSNRPRTISF KACNDIIYNG 120 LTQMNSPRIH ISIVACNNAT LSNLHLIAPE DSPNTDGIDI SMSHNIHVLD SSIQTGDDCI 180 AVNGGRGGSS DINITRVACG PGHGISIGSM GKNGEADIVE NVNVRNCSFL GTQNGARIKT 240 WHGGGGLAKN ILYEHITLTD TKYPIIIDQH YSNGGDVEGN AVKVSNVTFR HFEGTSASKI 300 AIKLDCDETE RCHNIVMEHI NITSSSPVKN LTTYCKFADV LASFVNIGIN CSSHKNLSYL 360 PLPPPFH* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-71 | 3 | 340 | 349 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-77 | 19 | 327 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-77 | 3 | 335 | 343 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 1.0e-91 | 3 | 326 | 330 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 5.0e-99 | 3 | 323 | 324 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_194963.2 | 0 | 1 | 271 | 52 | 322 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_194964.2 | 0 | 61 | 354 | 4 | 298 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_680757.1 | 0 | 1 | 365 | 4 | 370 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002324855.1 | 0 | 3 | 336 | 46 | 378 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515526.1 | 0 | 1 | 353 | 45 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-23 | 63 | 326 | 94 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 4e-20 | 74 | 298 | 55 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 4e-20 | 74 | 298 | 55 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 4e-20 | 74 | 298 | 55 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 4e-20 | 74 | 298 | 55 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CV536748 | 259 | 51 | 306 | 0 |
| CV538127 | 228 | 20 | 244 | 0 |
| CX192293 | 261 | 21 | 278 | 0 |
| EY474520 | 221 | 105 | 325 | 0 |
| GT141262 | 205 | 121 | 325 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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