| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10027457m |
| Family | GH28 |
| Protein Properties | Length: 366 Molecular Weight: 39330.4 Isoelectric Point: 4.8254 |
| Chromosome | Chromosome/Scaffold: 1 Start: 1844530 End: 1846933 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 53 | 351 | 0 |
| EGDMKTLLIPTDKTLLLQPVAFEGPCTSTSIKIQLDGDIVAPSNQKAWSNSQFEMWISFTTVSGLIVVGSGKINGCGSSFWEQKVSQRPTALHFTKCDNL RISGITSIDSPKNHISIKACENVAISNINLLAPEESPNTDGIDISDSTNVNIFESTIQTGDDCIAINTGNTNINITRINCGPGHGIKTTNGARIKTFPGG QGYARNISFEDITLINAKNPIIIDQHYVNTQRLDAAEDSAVAISSIKFIGFRGTTPNENAITLDCSATTRCKDVVMDGINITMADGEKPKVECKNVDGK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 366 Download |
| AIKLRILILI SFLCFGFVNG QNYNVLNFGA KGDGQTDDSK AFVEAWNATC GGEGDMKTLL 60 IPTDKTLLLQ PVAFEGPCTS TSIKIQLDGD IVAPSNQKAW SNSQFEMWIS FTTVSGLIVV 120 GSGKINGCGS SFWEQKVSQR PTALHFTKCD NLRISGITSI DSPKNHISIK ACENVAISNI 180 NLLAPEESPN TDGIDISDST NVNIFESTIQ TGDDCIAINT GNTNINITRI NCGPGHGIKT 240 TNGARIKTFP GGQGYARNIS FEDITLINAK NPIIIDQHYV NTQRLDAAED SAVAISSIKF 300 IGFRGTTPNE NAITLDCSAT TRCKDVVMDG INITMADGEK PKVECKNVDG KSEDTILMRD 360 CFQNA* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-64 | 6 | 357 | 387 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 4.0e-67 | 5 | 351 | 396 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 6.0e-82 | 25 | 362 | 371 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 3.0e-88 | 17 | 363 | 378 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 0 | 4 | 364 | 386 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC79138.1 | 0 | 2 | 364 | 3 | 381 | putative polygalacturonase [Arabidopsis thaliana] |
| EMBL | CAA20037.1 | 0 | 10 | 364 | 1 | 370 | putative polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_195292.2 | 0 | 4 | 364 | 5 | 390 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_198105.2 | 0 | 4 | 362 | 34 | 409 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_199297.1 | 0 | 2 | 363 | 3 | 380 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 0.00000000000005 | 129 | 348 | 84 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.00000000000005 | 129 | 348 | 84 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.00000000000005 | 129 | 348 | 84 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.00000000000005 | 129 | 348 | 84 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 0.00000000000005 | 129 | 348 | 84 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
