| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10027766m |
| Family | GH28 |
| Protein Properties | Length: 448 Molecular Weight: 47800.1 Isoelectric Point: 7.6304 |
| Chromosome | Chromosome/Scaffold: 14 Start: 2309943 End: 2311988 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 80 | 424 | 0 |
| SGGDGALLYVPRGVYLTESFNLTSHMTLYLADGAVIKAAQDTEKWPLIDPLPSYGRGRERPGRRYISFIHGDGLSDVVITGKNGTIDGAGEPWWNMWRHG TLKFTRPGLVEFKNSSNIVISHVVLQNSPFWTLHPVYCSGVVVHHVTILAPTDSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYNRPSR DITIRRITGSSPFAGIAIGSETSGGIQNVTVENITLYSSGIGIHIKTNIGRGGSVHGITISGVHMEKVRTGIKISGNTGDHPDDRFNTSALPIVSGITIK NVWGIKVERAGMVQGLKDSPFTNLCLSNVTLTGTKSSPIWKCSDV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 448 Download |
| MRISRAPISV CVMLFLLSAV FPHHLSLGGD PINTCSGIVP TRHRSEMLSI SDFGAVGDGR 60 TSNTNAFNAA IDRIRTGNRS GGDGALLYVP RGVYLTESFN LTSHMTLYLA DGAVIKAAQD 120 TEKWPLIDPL PSYGRGRERP GRRYISFIHG DGLSDVVITG KNGTIDGAGE PWWNMWRHGT 180 LKFTRPGLVE FKNSSNIVIS HVVLQNSPFW TLHPVYCSGV VVHHVTILAP TDSPNTDGID 240 PDSSSNVCIE DSYISTGDDL VAVKSGWDEY GIAYNRPSRD ITIRRITGSS PFAGIAIGSE 300 TSGGIQNVTV ENITLYSSGI GIHIKTNIGR GGSVHGITIS GVHMEKVRTG IKISGNTGDH 360 PDDRFNTSAL PIVSGITIKN VWGIKVERAG MVQGLKDSPF TNLCLSNVTL TGTKSSPIWK 420 CSDVVGAAEK VTPTACPELA STTQQGG* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 3.0e-21 | 13 | 382 | 384 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 5.0e-28 | 48 | 416 | 389 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 9.0e-29 | 45 | 444 | 418 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-32 | 147 | 424 | 284 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 7.0e-55 | 48 | 349 | 325 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC91250.1 | 0 | 8 | 442 | 4 | 434 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
| EMBL | CBI34471.1 | 0 | 13 | 446 | 10 | 441 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_194113.1 | 0 | 10 | 442 | 4 | 434 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_199002.1 | 0 | 1 | 447 | 1 | 443 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002509949.1 | 0 | 32 | 446 | 26 | 440 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2e-39 | 39 | 416 | 23 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2e-39 | 39 | 416 | 23 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2e-39 | 39 | 416 | 23 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2e-39 | 39 | 416 | 23 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 2e-21 | 93 | 424 | 51 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
