| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10028169m |
| Family | GH28 |
| Protein Properties | Length: 383 Molecular Weight: 41698.5 Isoelectric Point: 8.5943 |
| Chromosome | Chromosome/Scaffold: 14 Start: 8558501 End: 8561847 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 84 | 302 | 0 |
| GVGAACGSTDDAVIYVPKGRYLLSPIRFKGESCKSLDIFLRIDGTLVGSEDFRCLGREETWLSFERVTGVSVIGGSLDAKGPSLWACKGSSSNNCPSGAT TISFMGSSRIKVKGLLSLNSQMFHIVINRCRNVKIEDIRILADGKSPNTDGIHVQLSTDVEIHNASIKTGNDCISIGPGTKNFIGSLGKDREEEGVQNVT VKKTVFVGTDNGLRIKSWA | |||
| Full Sequence |
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| Protein Sequence Length: 383 Download |
| MVLGINLIFS RWTYRVLADA RKGTRKVRER TIWVQDQGKS RESRSTFESV GNFLQEIERA 60 GADAELTQQE SEQPQLLQKI LCQGVGAACG STDDAVIYVP KGRYLLSPIR FKGESCKSLD 120 IFLRIDGTLV GSEDFRCLGR EETWLSFERV TGVSVIGGSL DAKGPSLWAC KGSSSNNCPS 180 GATTISFMGS SRIKVKGLLS LNSQMFHIVI NRCRNVKIED IRILADGKSP NTDGIHVQLS 240 TDVEIHNASI KTGNDCISIG PGTKNFIGSL GKDREEEGVQ NVTVKKTVFV GTDNGLRIKS 300 WANPTSDVLC ESGVRINDVI YQGIRGTSAT KIAVKLDCSS KSPCTHIRMN DINLRYANEA 360 AKYSCVNVLG DTLGLVKSQA CF* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 5.0e-46 | 87 | 382 | 349 | + Probable polygalacturonase At3g15720 | ||
| PLN02793 | PLN02793 | 1.0e-48 | 88 | 382 | 348 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-55 | 89 | 368 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-58 | 87 | 368 | 338 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 5.0e-79 | 87 | 382 | 343 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK28449.1 | 0 | 87 | 382 | 56 | 397 | unknown [Arabidopsis thaliana] |
| EMBL | CBI23356.1 | 0 | 96 | 382 | 56 | 390 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_176735.1 | 0 | 87 | 382 | 56 | 397 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002315106.1 | 0 | 87 | 382 | 57 | 397 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002524365.1 | 0 | 79 | 382 | 40 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 0.0000000002 | 87 | 324 | 1 | 260 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.0000000002 | 87 | 324 | 1 | 260 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.0000000002 | 87 | 324 | 1 | 260 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.0000000002 | 87 | 324 | 1 | 260 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 0.0000000002 | 87 | 324 | 1 | 260 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CA926727 | 213 | 87 | 285 | 0 |
| JZ194028 | 290 | 122 | 365 | 0 |
| JZ191937 | 300 | 129 | 382 | 0 |
| CA927124 | 210 | 87 | 282 | 0 |
| JZ192826 | 285 | 127 | 365 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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