| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10028331m |
| Family | GH28 |
| Protein Properties | Length: 385 Molecular Weight: 42757.2 Isoelectric Point: 7.2563 |
| Chromosome | Chromosome/Scaffold: 14 Start: 3977146 End: 3979849 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 67 | 294 | 0 |
| GSNSTMHIPQGRTFLLQPIEFRGPCKSKNIVFSIRGNLTAPEGPDQWKCNGDRCHQWIEFAHINGLYIDGHGQGTLDGKGPKWWSIDCKKHKQGVIISHS SNVHISNIMVKDSPNFQLSLEDSTLVFAKQLTIIADGDSPNTDGMHIQRSQNVIVYNSNISTGDDCISIGDGSRDISISEISCGPGHGISIGSLGRNGEK GTVENVLVRNCTFRKTDNGVRIKTWQTN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 385 Download |
| MTNFLVLLTF LLSLALFLNF QLAQSQSSFH HSNKIFNVFD YGAIGDGNSD DTKAFKNAWE 60 DTCNYIGSNS TMHIPQGRTF LLQPIEFRGP CKSKNIVFSI RGNLTAPEGP DQWKCNGDRC 120 HQWIEFAHIN GLYIDGHGQG TLDGKGPKWW SIDCKKHKQG VIISHSSNVH ISNIMVKDSP 180 NFQLSLEDST LVFAKQLTII ADGDSPNTDG MHIQRSQNVI VYNSNISTGD DCISIGDGSR 240 DISISEISCG PGHGISIGSL GRNGEKGTVE NVLVRNCTFR KTDNGVRIKT WQTNAVEIKN 300 VLYNHIHGTS IRKPFVKLLC SKSVPCTGIF MSNINIQDEE EEEEMEYHHK SRHDDHPPAE 360 CINVRGFSNG VVKPKLACLV SRRH* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-51 | 67 | 336 | 314 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03010 | PLN03010 | 8.0e-55 | 34 | 369 | 375 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 6.0e-59 | 37 | 337 | 347 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 8.0e-60 | 32 | 379 | 389 | + Probable polygalacturonase At3g15720 | ||
| PLN02793 | PLN02793 | 8.0e-61 | 32 | 336 | 352 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB10216.1 | 0 | 1 | 384 | 1 | 411 | polygalacturonase-like protein [Arabidopsis thaliana] |
| EMBL | CBI15273.1 | 0 | 16 | 379 | 8 | 388 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_198807.1 | 0 | 1 | 384 | 1 | 373 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002267182.1 | 0 | 16 | 379 | 8 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002321662.1 | 0 | 28 | 379 | 18 | 352 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-19 | 116 | 316 | 95 | 309 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 0.000000000000003 | 132 | 333 | 74 | 285 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 0.000000000000003 | 132 | 333 | 74 | 285 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 0.000000000000003 | 132 | 333 | 74 | 285 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1nhc_F | 0.000000000000008 | 142 | 337 | 80 | 286 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
