| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10028466m |
| Family | CBM22 |
| Protein Properties | Length: 737 Molecular Weight: 82866.1 Isoelectric Point: 5.9136 |
| Chromosome | Chromosome/Scaffold: 3 Start: 16085259 End: 16089227 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 197 | 330 | 2.1e-24 |
| NIVENSEVKDGATQPWFTLGNCKLSVGQGAPRTLPPMARDTLGLHEPLGGNYIHMLTDKLKIFLTYQISAWVKIGVGVSSGMSPQNVNISLSVDNQWVNG GQVEVIIGDTWHEIGGSFRLEKQPQNVMVYVQGP | |||
| CBM22 | 27 | 162 | 2.4e-29 |
| IILNPNFEDGLNNWSGRGCKAILHQSMDGGRIVPLSGHFFAAATERKATWNGIQQEISGRFQRKRVYEVTALVRIIGNNVTSATVQATLWVLNANQREQY IGIANLQATNKDWVELRGKFVIHGSPSRVILFLEGP | |||
| GH10 | 388 | 667 | 0 |
| KQTYNSFPVGTCINRTDIDNEDFVDFFTKNFNWAVFGNELKWYWTEAERGKLSYQDADDLLDLCIGNNINVRGHCIFWEVESTVQQWVRQLNKTELMNAV QKRLTDVLTRYKGKFKHYDVNNEMLHGSFYQDRLGKGVRALMFNIARKLDPSALLFVNDYHVEDGNDPQSSPEKYIKLVLDLEAQGAAIGGIGIQGHIDS PVGAIVCSALDKLSVLGHPIWFTELDVSSSNEYVRGEDLEVMMWEAFAHPAVEGIMLWGFWELSMSRENSNLVEGEGEVN | |||
| Full Sequence |
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| Protein Sequence Length: 737 Download |
| MEKTAKIKHS KDNDDDKHHT NEEHESIILN PNFEDGLNNW SGRGCKAILH QSMDGGRIVP 60 LSGHFFAAAT ERKATWNGIQ QEISGRFQRK RVYEVTALVR IIGNNVTSAT VQATLWVLNA 120 NQREQYIGIA NLQATNKDWV ELRGKFVIHG SPSRVILFLE GPPPGTDILL NTLVVKHARR 180 NRPSPPPFYE NPSFGVNIVE NSEVKDGATQ PWFTLGNCKL SVGQGAPRTL PPMARDTLGL 240 HEPLGGNYIH MLTDKLKIFL TYQISAWVKI GVGVSSGMSP QNVNISLSVD NQWVNGGQVE 300 VIIGDTWHEI GGSFRLEKQP QNVMVYVQGP AAGIDLMISA LQIFPVDRRE RLRCLRNKVD 360 QVRKRDIVLK FSGLDDSCDL FPYIVKVKQT YNSFPVGTCI NRTDIDNEDF VDFFTKNFNW 420 AVFGNELKWY WTEAERGKLS YQDADDLLDL CIGNNINVRG HCIFWEVEST VQQWVRQLNK 480 TELMNAVQKR LTDVLTRYKG KFKHYDVNNE MLHGSFYQDR LGKGVRALMF NIARKLDPSA 540 LLFVNDYHVE DGNDPQSSPE KYIKLVLDLE AQGAAIGGIG IQGHIDSPVG AIVCSALDKL 600 SVLGHPIWFT ELDVSSSNEY VRGEDLEVMM WEAFAHPAVE GIMLWGFWEL SMSRENSNLV 660 EGEGEVNEAG KRFMEVKQEW LSHAYGVIND ESEFIFRGYH GTYAIEVCTP AGVVLQTFIV 720 EKGDSPFILS IDLSSL* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 1.0e-6 | 196 | 332 | 144 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 6.0e-16 | 27 | 166 | 141 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 5.0e-23 | 425 | 647 | 244 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| smart00633 | Glyco_10 | 4.0e-68 | 427 | 673 | 268 | + Glycosyl hydrolase family 10. | ||
| pfam00331 | Glyco_hydro_10 | 1.0e-79 | 386 | 677 | 313 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG50641.1 | 2e-19 | 11 | 343 | 6 | 345 | AC082643_5 xylan endohydrolase isoenzyme, putative [Arabidopsis thaliana] |
| GenBank | AAG50641.1 | 0 | 23 | 736 | 193 | 915 | AC082643_5 xylan endohydrolase isoenzyme, putative [Arabidopsis thaliana] |
| DDBJ | BAC42019.1 | 0 | 1 | 736 | 1 | 752 | putative xylan endohydrolase [Arabidopsis thaliana] |
| RefSeq | NP_001031593.1 | 0 | 1 | 641 | 1 | 657 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_192556.2 | 0 | 1 | 736 | 1 | 752 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1i1x_A | 2e-26 | 417 | 667 | 39 | 289 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1i1w_A | 2e-26 | 417 | 667 | 39 | 289 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1tux_A | 9e-26 | 425 | 621 | 47 | 249 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 2e-25 | 417 | 667 | 39 | 289 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| PDB | 1nq6_A | 3e-25 | 425 | 668 | 44 | 291 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO850973 | 329 | 314 | 642 | 0 |
| GW865493 | 311 | 286 | 596 | 0 |
| EL428755 | 280 | 394 | 673 | 0 |
| EB442796 | 303 | 225 | 514 | 0 |
| EB442796 | 116 | 60 | 175 | 0.001 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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