Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10029273m |
Family | GH28 |
Protein Properties | Length: 342 Molecular Weight: 37730 Isoelectric Point: 6.7061 |
Chromosome | Chromosome/Scaffold: 3 Start: 829982 End: 832098 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 67 | 274 | 0 |
DNDNNTVSVLLVPYGFTFMIHSTIFTGPCRSYQHFQVDGTIVPRDGPESWPRGVNKRQWLVFYRINGMALVGVGVIDGRGQKWWDLPCKPHRNVNKTTAI AGPCESPAALRFFMSSNLIVKGVSIKNSPQFHLKFDGCHEVHVNSLRITSPQLSPNTDGIHLENSNSVEIYNSVISNGDDCVSIGSGSHNIDIRNLTCGP GGHGISSS |
Full Sequence |
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Protein Sequence Length: 342 Download |
PPSSSISQSQ PPSLSQNPND SWQSPSPSQD PDHEVVYDVR NYGAVGDGLT DDTESFKKAW 60 DSACTNDNDN NTVSVLLVPY GFTFMIHSTI FTGPCRSYQH FQVDGTIVPR DGPESWPRGV 120 NKRQWLVFYR INGMALVGVG VIDGRGQKWW DLPCKPHRNV NKTTAIAGPC ESPAALRFFM 180 SSNLIVKGVS IKNSPQFHLK FDGCHEVHVN SLRITSPQLS PNTDGIHLEN SNSVEIYNSV 240 ISNGDDCVSI GSGSHNIDIR NLTCGPGGHG ISSSTSIHPH ECFTTRSRSH FLYESSPYHI 300 FYLQIGDYID RCLSFISSLT SICCFHLLFG TNLLTNRSYS H* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 6.0e-42 | 72 | 264 | 193 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 2.0e-43 | 38 | 264 | 229 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 6.0e-45 | 37 | 264 | 229 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-54 | 39 | 264 | 229 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-58 | 34 | 264 | 232 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD22651.1 | 0 | 23 | 272 | 51 | 283 | AC007138_15 putative polygalacturonidase [Arabidopsis thaliana] |
RefSeq | NP_192098.2 | 0 | 23 | 272 | 51 | 299 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_563654.1 | 0 | 32 | 272 | 84 | 322 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002320271.1 | 0 | 36 | 272 | 42 | 272 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515219.1 | 0 | 36 | 272 | 141 | 371 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0.00000000003 | 29 | 253 | 22 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0.00000000003 | 29 | 253 | 22 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0.00000000003 | 29 | 253 | 22 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0.00000000003 | 29 | 253 | 22 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1nhc_F | 0.00000003 | 141 | 272 | 79 | 200 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EY170913 | 234 | 33 | 264 | 0 |
DY668959 | 215 | 35 | 249 | 0 |
DV135481 | 219 | 46 | 264 | 0 |
FC895111 | 231 | 34 | 264 | 0 |
CO126030 | 231 | 34 | 264 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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