| Basic Information | |
|---|---|
| Species | Volvox carteri |
| Cazyme ID | Vocar20001112m |
| Family | CBM20 |
| Protein Properties | Length: 2226 Molecular Weight: 236118 Isoelectric Point: 4.911 |
| Chromosome | Chromosome/Scaffold: 16 Start: 814365 End: 835769 |
| Description | Carbohydrate-binding-like fold |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM20 | 156 | 239 | 8.9e-21 |
| RLHFLVPSFASQPGQQLVVVGSCERLGRWQPGKGLALQWGEGHRWSGEVVLEVQQAHGTEFKVLMVDSRTNTVMWEPGRNRVLQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 2226 Download |
| MQSMLDDVVQ SGCTNSSRAR KPTGKLNRQQ SVLLGGGEHA AWLQLGIHQS DSVMGFKAQS 60 WILHQGQLRA SNTSSATQTL PALPQGPSRS KPGAETSPSR AATIPGETSN GYATNSHNSS 120 SASGGATGHD RNPGPTIATD VAAGSETPPS PPRTVRLHFL VPSFASQPGQ QLVVVGSCER 180 LGRWQPGKGL ALQWGEGHRW SGEVVLEVQQ AHGTEFKVLM VDSRTNTVMW EPGRNRVLQL 240 VLCEWGHELS HIEAPPPGPA PSKGTTSLGA ATTTTTATSS SPSSSAGAGS GLRVRVQVVV 300 PLFVGGPGQR LVVVGSLPEL GGWEVGRGVE LSCSPGHIWR GEVELPLGTM MEVKLVVLGP 360 GPGDQRWEAG PNRTLTLQVP PPEDILPPPP SSAQPPPHPS APSAAVPRPP ARGVAGHYVL 420 LLHWGITGCS QPLYRPDLPV EVNGNAAAAA PPLPPPDGCG CDGDAAAGAS LSDRQVLSLV 480 HFTVPQFVTL PGQHLVLVGS VPAMGGWNPS SGVELKWGPG HCWSAELLLP VQQDVEAKVV 540 YYDNGRYSWE PGPNRSLQLS RVLAGCSAVA EPLFTCYWGH TPTTPISERY LANARGGASV 600 IVVRMLRPVV VVPRPYPRDL PPELQQLEGE VVMEVPEQQQ QHTPTVTSEV VVLGEEANDR 660 SPAGDHPLLQ FLVFMMSTFM HDTNPQVEHD QVDEEVDKDV VDVAAVAAGP YFAQWEAARK 720 ALRAAKFRNT KLAWELAETR RQFQARLAEL SQITEQSDLA AAGAAAPGPP GHDGNLSSSA 780 GGAEGEARML VPPAPALLDM GPQALSAAVS ALVGRVAPLE LQSLRELLRA VQAAEGELAA 840 RARQMGPVPS TAEKRELMDR EMVVVEARDE LRNRLARLVA TGGPAVAAAV RRAAAADGGA 900 AATTTTTAAA AAETAAAGSP SSRQVDVDAA SSSSAAAAAA VSALRSAMEA AREQHRVEMA 960 AAQQAGPAEV AHLEGQLEAL RQQHTEAAEA AALATAVAAD SNAAAEALIR DLRSAVQSAD 1020 AGATAAEAAA AAARSGFRTR EAELLRQLEE LRRQLAEAVS ERRGSGGDAD AAKAAEDSVA 1080 RLRAESYARH QAQQAAKRAA SEAEARAEAA ERHQRELEEM RESAQRQLEV LRLAMEAQRA 1140 ADAAALASLE QAAAAREAEL AAKLQEAHVQ QEALKAAAAT QRSETEAALG GLAARVAQRE 1200 AELSELSCQL EATRGSVQAA REAGAALGRG IEDLAWELSA ALTAAASTGE HRREREGAGG 1260 GVDAQAEAEL RAEIEGLMSH AASLEHQLAE ARQQYNTDLL AAEQLAVEAR EAALAAARRD 1320 FESRCAAMRA AHEAELEAAR RREEDLHAAL QELSSQMEAV ARERELALRQ RLEGDLARAA 1380 AAYDQVSTAL AEQQLAAAVA AAASEEGRQA AAAAADAARA AYEEMAARQQ VMAEEQLRRE 1440 LAALAASHSA EVAALQAQHA QQLAERAAAV EEVAEALGAE MAELRGELER RGEMYSALLA 1500 DERQVAAAAA AAEERVSELE QRLALTEDRH RQELGELRVQ LDKAAAASEL LAARAPVEEE 1560 EPAKTAAAAA AAELVGAGME ASAAVALAAQ VAESAAVLQQ QLQLAEARQQ QLAEAEAQQR 1620 ALEVRLAEAT GGLAEARHEY ERQLAEAEAV LGEARRRFEA RLEEQQLRVV EEVAARKRDL 1680 ELQEAALQDE HVALAARFQS QLESALLSHK AREEELAGEH RRQVTEVEEE FRGRMKDLTS 1740 QLDAAQKQLQ EAEEREKQAL GELAALRQVT ERKRREAAAS EARRQSELEA LRHNVQAQQL 1800 EDEQVCTAAE EMEPQEQWQR QQQTLEGLQA QVAALQRRLS EEEAAHSAKM AALAGSHMAA 1860 LESRRAQHRR EMQELRVAAA ISMAQMEAAA EAHAAEMQEV GKVGGEALSE LREELAQQLQ 1920 DEHVAVAARF QSQLESALLS HKAREEELAG EHRRQVTEVE EEFRGRMKDL TSQLDAAQKQ 1980 LQEAEEREKQ GLESEEAALA HPLAESEARV AAVRAAIATW KAQVEELRGL MAEATSAHAA 2040 HTALISGRAA EALAELRATH SRELQASRTR GDGGGGKGVL CISVCMCTYA GIRQVAAEAL 2100 AAVEARAEAA ARAQAAEVGA VERAGGEVVS ELKAQLWAAQ RAADEARRAK DASLAVAAAD 2160 REVGAAAVGE LQARLDASLA AVSYLAWLLG AAQTGYSTEL AKAESRAVEL TRAHLVGLWT 2220 WTGVRL 2280 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart01065 | CBM_2 | 1.0e-11 | 310 | 377 | 71 | + Starch binding domain. | ||
| smart01065 | CBM_2 | 2.0e-14 | 155 | 240 | 89 | + Starch binding domain. | ||
| cd05467 | CBM20 | 3.0e-16 | 480 | 559 | 84 | + The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch. | ||
| cd05467 | CBM20 | 3.0e-16 | 167 | 240 | 75 | + The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch. | ||
| smart01065 | CBM_2 | 1.0e-17 | 480 | 560 | 85 | + Starch binding domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:2001070 | starch binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001694683.1 | 0.000000000000007 | 294 | 586 | 61 | 333 | predicted protein [Chlamydomonas reinhardtii] |
| RefSeq | XP_001694765.1 | 0.000000000000004 | 151 | 375 | 81 | 357 | low-CO2-inducible protein [Chlamydomonas reinhardtii] |
| RefSeq | XP_001694765.1 | 0.00000000001 | 289 | 431 | 80 | 192 | low-CO2-inducible protein [Chlamydomonas reinhardtii] |
| RefSeq | XP_001694765.1 | 0.0003 | 471 | 583 | 268 | 377 | low-CO2-inducible protein [Chlamydomonas reinhardtii] |
| RefSeq | XP_001694765.1 | 0.0000000003 | 482 | 599 | 89 | 204 | low-CO2-inducible protein [Chlamydomonas reinhardtii] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1kum_A | 0.0006 | 308 | 377 | 20 | 92 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| PDB | 1kul_A | 0.0006 | 308 | 377 | 20 | 92 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| PDB | 1acz_A | 0.0006 | 308 | 377 | 20 | 92 | A Chain A, Glucoamylase, Granular Starch-Binding Domain Complex With Cyclodextrin, Nmr, 5 Structures |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| JG636265 | 68 | 492 | 558 | 0.0000000003 |
| HO158040 | 117 | 480 | 595 | 0.0000000005 |
| JG636265 | 71 | 169 | 239 | 0.000001 |
| HO158040 | 103 | 154 | 248 | 0.000004 |
| JG636265 | 65 | 311 | 375 | 0.012 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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