| Basic Information | |
|---|---|
| Species | Volvox carteri |
| Cazyme ID | Vocar20011161m |
| Family | CBM47 |
| Protein Properties | Length: 231 Molecular Weight: 25164.6 Isoelectric Point: 8.9426 |
| Chromosome | Chromosome/Scaffold: 43 Start: 831812 End: 833296 |
| Description | |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM47 | 74 | 201 | 2.5e-22 |
| GYAVDGVTEYPSPLHASTLSLFHSEASDPTPWISVDLGAVALVKRVVIINRRDCCQDRLRNAELRIGNVSITNAAGGGDTRNITGNPLVWQQDAGTYINA SATIPFDTPKVGRWVTLQIKQPTLQITE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 231 Download |
| MARRKAASSC WRGEPSTSSA VMPVISLPLL LLATLMMATC ATGDDDLPNL ALRQATYASS 60 VNWTWEVSTY LYPGYAVDGV TEYPSPLHAS TLSLFHSEAS DPTPWISVDL GAVALVKRVV 120 IINRRDCCQD RLRNAELRIG NVSITNAAGG GDTRNITGNP LVWQQDAGTY INASATIPFD 180 TPKVGRWVTL QIKQPTLQIT EIQVFGYYAA SAGQQRLYIR CNSSGRRRPR * 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00754 | F5_F8_type_C | 1.0e-5 | 54 | 196 | 143 | + F5/8 type C domain. This domain is also known as the discoidin (DS) domain family. | ||
| smart00607 | FTP | 2.0e-7 | 49 | 205 | 166 | + eel-Fucolectin Tachylectin-4 Pentaxrin-1 Domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0007155 | cell adhesion |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAF76636.1 | 0.00000000002 | 49 | 207 | 99 | 253 | tachylectin-4 [Tachypleus tridentatus] |
| RefSeq | XP_001692660.1 | 3e-16 | 72 | 217 | 358 | 495 | predicted protein [Chlamydomonas reinhardtii] |
| RefSeq | XP_002612845.1 | 0.00000000005 | 49 | 214 | 445 | 588 | hypothetical protein BRAFLDRAFT_118409 [Branchiostoma floridae] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3cqo_C | 0.000003 | 104 | 209 | 51 | 148 | A Chain A, Crystal Structure Of A F-Lectin (Fucolectin) From Morone Saxatilis (Striped Bass) Serum |
| PDB | 3cqo_B | 0.000003 | 104 | 209 | 51 | 148 | A Chain A, Crystal Structure Of A F-Lectin (Fucolectin) From Morone Saxatilis (Striped Bass) Serum |
| PDB | 3cqo_A | 0.000003 | 104 | 209 | 51 | 148 | A Chain A, Crystal Structure Of A F-Lectin (Fucolectin) From Morone Saxatilis (Striped Bass) Serum |
| Transmembrane Domains | |||||
|---|---|---|---|---|---|
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| Start | End | ||||
| 21 | 43 | ||||
| Signal Peptide | |||||
|---|---|---|---|---|---|
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| Cleavage Site | |||||
| 43 | |||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| GT033236 | 166 | 49 | 208 | 0.002 |
| DV101342 | 118 | 93 | 206 | 0.008 |
| DV100301 | 118 | 93 | 206 | 0.008 |
| GE198518 | 103 | 108 | 207 | 0.009 |
| GE177867 | 105 | 105 | 206 | 0.01 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Volvox carteri | Vocar20002885m | Vocar20011098m | |||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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