| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_000528m |
| Family | CBM53 |
| Protein Properties | Length: 1147 Molecular Weight: 130615 Isoelectric Point: 7.1301 |
| Chromosome | Chromosome/Scaffold: 06598 Start: 116245 End: 127509 |
| Description | starch synthase 3 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM53 | 264 | 347 | 1.2e-32 |
| QDIEVYLNRSLSTLNNEPNVLIMGAFNDWRWKSFTISLTKTHLKGDWWSCQVHVPKEAYKMDFVFFNGKNAYDNNDKKDFCIPV | |||
| CBM53 | 440 | 528 | 2e-33 |
| LVQLYYNKSSGPLAHANDLWIHGGYNNWNNGLVVVEKLLKSERKDGDWWYANVVVPDRALLLDWVFADGPPQSAMVYDNNHRQDFHAIV | |||
| CBM53 | 601 | 688 | 1e-33 |
| TAVTVFYNPANTVLHGKSEVWIRCSFNRWTHRKGPLPPQKMFPTGHGSHVKATVKVPLDAYMMDFVFSEREDGGIFDNRGGMDYHIPV | |||
| GT5 | 699 | 1142 | 0 |
| HIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHSVDIILPKYDCLNLSHVKDFHYQKSYSWGGTEIKVWFGKVEDLSVYFLEPLNGMFWTGCIYGCKND GQRFGFFCHAALEFLQQNGFHPDIIHCHDWSSAPVAWLFKDHYTHYGLSKARVVFTIHNLEFGAGNIGRAMAYTDKSTTVSPTYSKEVAGNPSVAPHLHK FHGILNGIDPDIWDPYNDKFIPVSYTSENVVEGKRAAKEALQQRVGLKKADLPLVGVITRLTHQKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRVQNDFL NLANKLRSSHNHHARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLYDTVFDVDHDKERAQAQSLEPNGFSFDGADAAGI DYALNRAISSWYEGREWFYSLCKTVMEQDWSWNKPALDYLELYH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 1147 Download |
| MEVGLQVHRP LSCRALFHRR TVFKFNRLSG SFPHFNSSHL SSLTSCYSKY PTLGVSCDVI 60 AGADFSKRRQ RKISTANSKG PPPKRFTSKT PARTSTTKRD SKKNGSKEDE VSPTSSEIVD 120 PHKKTLELKA DVDAEQAIEV SKDEKVNQEK KTEEASSVSK TLSVTKINQY VENRSAGSVE 180 VKTMPVDEIT IEERQVDDLK SDSTLKEGSA GTVEKTNEDE VSSLKLRLEV EENLRKQEIE 240 ELAEDNFSRG NKLFVYPHLV KPDQDIEVYL NRSLSTLNNE PNVLIMGAFN DWRWKSFTIS 300 LTKTHLKGDW WSCQVHVPKE AYKMDFVFFN GKNAYDNNDK KDFCIPVAGG MDAFAFDDFL 360 LEERRREQEK LAREQAERER QAEEQRRREE EKAASEADRA QAKVETEKRR EILHQLMKNA 420 PRSVDNVWYI EPNEFRGEDL VQLYYNKSSG PLAHANDLWI HGGYNNWNNG LVVVEKLLKS 480 ERKDGDWWYA NVVVPDRALL LDWVFADGPP QSAMVYDNNH RQDFHAIVPM SIPEELFWVE 540 EEHQMYRKLQ EERQLREQAM HAKAERTARV KAERKEKTLK RFLLSQKHIV YTDPVSVQAG 600 TAVTVFYNPA NTVLHGKSEV WIRCSFNRWT HRKGPLPPQK MFPTGHGSHV KATVKVPLDA 660 YMMDFVFSER EDGGIFDNRG GMDYHIPVFG GIVKEPPIHI VHIAVEMAPI AKVGGLGDVV 720 TSLSRAVQDL NHSVDIILPK YDCLNLSHVK DFHYQKSYSW GGTEIKVWFG KVEDLSVYFL 780 EPLNGMFWTG CIYGCKNDGQ RFGFFCHAAL EFLQQNGFHP DIIHCHDWSS APVAWLFKDH 840 YTHYGLSKAR VVFTIHNLEF GAGNIGRAMA YTDKSTTVSP TYSKEVAGNP SVAPHLHKFH 900 GILNGIDPDI WDPYNDKFIP VSYTSENVVE GKRAAKEALQ QRVGLKKADL PLVGVITRLT 960 HQKGIHLIKH AIWRTLDRGG QVVLLGSAPD PRVQNDFLNL ANKLRSSHNH HARLCLTYDE 1020 PLSHLIYAGA DFILVPSIFE PCGLTQLTAM RYGSIPVVRK TGGLYDTVFD VDHDKERAQA 1080 QSLEPNGFSF DGADAAGIDY ALNRAISSWY EGREWFYSLC KTVMEQDWSW NKPALDYLEL 1140 YHAARK* 1200 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02939 | PLN02939 | 2.0e-143 | 698 | 1144 | 493 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 6.0e-149 | 698 | 1144 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 2.0e-164 | 699 | 1146 | 486 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 3.0e-174 | 699 | 1142 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PLN02316 | PLN02316 | 0 | 73 | 1146 | 1074 | + synthase/transferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| GO:2001070 | starch binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACT09059.1 | 0 | 1 | 1146 | 1 | 1228 | starch synthase III precursor [Solanum lycopersicum] |
| EMBL | CAA64173.1 | 0 | 1 | 1146 | 1 | 1228 | soluble-starch-synthase [Solanum tuberosum] |
| RefSeq | XP_002269011.1 | 0 | 1 | 1146 | 1 | 1140 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002305571.1 | 0 | 171 | 1146 | 29 | 1017 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518476.1 | 0 | 73 | 1146 | 1 | 1058 | starch synthase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 698 | 1142 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 698 | 1142 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 698 | 1142 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 698 | 1142 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 698 | 1142 | 1 | 474 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778003 | 730 | 204 | 933 | 0 |
| HO794758 | 577 | 571 | 1146 | 0 |
| HO778003 | 355 | 194 | 535 | 0.00000000002 |
| HO794758 | 114 | 247 | 351 | 0.0008 |
| HO794758 | 133 | 405 | 535 | 0.24 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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