| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_001042m |
| Family | CBM53 |
| Protein Properties | Length: 967 Molecular Weight: 110200 Isoelectric Point: 6.1748 |
| Chromosome | Chromosome/Scaffold: 00419 Start: 1939 End: 13346 |
| Description | starch synthase 3 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM53 | 421 | 508 | 7.4e-32 |
| TAVTIFYNPANTILNGKSEVWIRCSFNHWTHHNGPLPPQKMLPADNGSHVKSTVKVPLDAYMMDLVFSEREDGGIFDNGDGMDYHIPV | |||
| CBM53 | 261 | 348 | 4.2e-33 |
| VQLYYNKSSGPLSHANDLWIHGGYNNWNDGLVFVEKLVKSERKEGDWWYANVVVPDQVLVLDWVFADGPPQSAIVYDNNQRQDFHAVV | |||
| CBM53 | 91 | 174 | 3.3e-33 |
| KYIQVYLNRSLSTLNNEPDVLIMGAFNEWRWKSFTMRLNKTHLKGDWWSCQVHVPKEAYKMDFVFFNGKNAYDNNDKRDFCIPI | |||
| GT5 | 519 | 962 | 0 |
| HIVHVAVEMAPIAKVGGLGDVITGISRAVQDLNHSVDIILPKYDCLNLSHVKDFYHQKSYSWGGTEIKVWYGKVEGLSVYFLEPVNGMFSTGCIYGCRND SERFGFFCHAALEFLLQNELHPDIIHCHDWSSAPVAWLFKDHYMDYGLSKARVVFTIHNLEFGAGHIAKAMAYSDKSTTVSPTYSKEVAGNPAVSPHLRK FHGILNGIDPDIWDPYNDEFIPVSYISENVVEGKRAAKEALQQRSRLKKADIPLVGIITRLTHQKGIHLIKHAIWQTLDRHGQVVLLGSAPDPRVQRDFE NLASQLHSSHSDRARLFLTYDEPLSHLIYAGADFILVPSMFEPCGLAQLTAMRYGAIPVVRKTGGLYDTVFDVDHDKERSQAKGLEPNGFNFGGADAAGI DYALNRAISVWFEDREWFNSLCKTVMEQDWSWNKPALDYMELYH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 967 Download |
| MENGTVGSVE CMSGPVDEIT IEERQFGNSK SDSIVNENVG TDEKSTKDPS LKLKMEMEEN 60 SQKQEIEVLA EENFSRGNKL FVYPQLAKPD KYIQVYLNRS LSTLNNEPDV LIMGAFNEWR 120 WKSFTMRLNK THLKGDWWSC QVHVPKEAYK MDFVFFNGKN AYDNNDKRDF CIPIEVGMDA 180 FPSDDFLLEE KCREQSERER RAEEQRQREE EKAASEADRA KAKVKTEKSQ EILLQLMKNA 240 ARSVDNVWYI EPSEFHGGGL VQLYYNKSSG PLSHANDLWI HGGYNNWNDG LVFVEKLVKS 300 ERKEGDWWYA NVVVPDQVLV LDWVFADGPP QSAIVYDNNQ RQDFHAVVAK PIPEGLFSFE 360 EEHQKHRKPQ EERQLREEDI RAKAARTTRM KAERKERTLK RFLLYQKHIL YTDPLDVQAG 420 TAVTIFYNPA NTILNGKSEV WIRCSFNHWT HHNGPLPPQK MLPADNGSHV KSTVKVPLDA 480 YMMDLVFSER EDGGIFDNGD GMDYHIPVFG GTVKEPPMHI VHVAVEMAPI AKVGGLGDVI 540 TGISRAVQDL NHSVDIILPK YDCLNLSHVK DFYHQKSYSW GGTEIKVWYG KVEGLSVYFL 600 EPVNGMFSTG CIYGCRNDSE RFGFFCHAAL EFLLQNELHP DIIHCHDWSS APVAWLFKDH 660 YMDYGLSKAR VVFTIHNLEF GAGHIAKAMA YSDKSTTVSP TYSKEVAGNP AVSPHLRKFH 720 GILNGIDPDI WDPYNDEFIP VSYISENVVE GKRAAKEALQ QRSRLKKADI PLVGIITRLT 780 HQKGIHLIKH AIWQTLDRHG QVVLLGSAPD PRVQRDFENL ASQLHSSHSD RARLFLTYDE 840 PLSHLIYAGA DFILVPSMFE PCGLAQLTAM RYGAIPVVRK TGGLYDTVFD VDHDKERSQA 900 KGLEPNGFNF GGADAAGIDY ALNRAISVWF EDREWFNSLC KTVMEQDWSW NKPALDYMEL 960 YHAARK* 1020 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02939 | PLN02939 | 3.0e-135 | 518 | 964 | 493 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 4.0e-142 | 518 | 964 | 494 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 1.0e-153 | 518 | 966 | 496 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 5.0e-161 | 519 | 962 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PLN02316 | PLN02316 | 0 | 17 | 966 | 959 | + synthase/transferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| GO:2001070 | starch binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAF49176.1 | 0 | 3 | 966 | 185 | 1163 | starch synthase III [Phaseolus vulgaris] |
| EMBL | CAB40374.1 | 0 | 42 | 966 | 214 | 1145 | Starch synthase isoform SS III [Vigna unguiculata] |
| RefSeq | XP_002269011.1 | 0 | 17 | 966 | 183 | 1140 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002305571.1 | 0 | 17 | 966 | 45 | 1017 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518476.1 | 0 | 1 | 966 | 94 | 1058 | starch synthase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 518 | 962 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 518 | 962 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 518 | 962 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 518 | 962 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 518 | 962 | 1 | 474 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778003 | 737 | 26 | 753 | 0 |
| HO794758 | 567 | 400 | 966 | 0 |
| HO651392 | 413 | 555 | 967 | 0 |
| HO794758 | 114 | 74 | 178 | 0.002 |
| HO794758 | 126 | 225 | 348 | 0.5 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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