Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_001250m |
Family | CBM22 |
Protein Properties | Length: 920 Molecular Weight: 101769 Isoelectric Point: 6.1317 |
Chromosome | Chromosome/Scaffold: 03299 Start: 194424 End: 200190 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 204 | 340 | 1.5e-29 |
NIIINPKFEDGLNNWSGRGCKIALHDSMADGKIVPQSGKIFASATERNQSWNGIQQEITGRVQRKLAYEAIAVVRIFGNNVTSADVRATLWVQTPDLREQ YIGIANLQATDKDWVQLQGKFLLNGNPKRVVIYLEGP | |||
CBM22 | 30 | 167 | 2.8e-33 |
NIIINHDFSGGLHSWHPNCCNGFVVSAESGHPGFVAKPGSNYAVVSNRKECWQGLEQDITSRISPGYTYSVSARVGVSGPMQGPADVLGTLKLRYRDSLT DYLFIAKTTVSKEGWEKLEGTFTLLTMPDQVVFYLEGP | |||
CBM22 | 375 | 516 | 2.20004e-43 |
NIIQNSNLSDGTNGWFPLGNCNLSVATGSPYILPPMARDSLGPYEPLSGRYILVTKRTQTWMGPAQMITDNIKLLLTYQVSAWVKISSGATGPQNVNVAL GVDSQWVNGGQVEISDNRWHEIGGSFRIEKQPSKVMVYVQGP | |||
GH10 | 571 | 847 | 0 |
KVNQTQNSFPFGTCISRTNIDNEDFVSFFVKNFNWAVFGNELKWYWTEAQQGNFNYRDADEMLDICVKNKIETRGHCIFWEVEGTVQPWIKALNKNDLMT AVQNRLTGLLTRYKGKFMHYDVNNEMLHGSFYQDRLGKDIRANMFKTANQLDQSATLFVNDYHVEDGDDTRSCPEKYITQILDLQEQGAPVGGIGIQGHI DSPVGPIVSSALDKLGILGLPIWFTELDVSSINEYVRGDDLEVMLREAYAHPAVEGIMLWGFWELFMSRDNAHLVNA |
Full Sequence |
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Protein Sequence Length: 920 Download |
MENPQVKNGN KKSENVNPGM SGSSGNSATN IIINHDFSGG LHSWHPNCCN GFVVSAESGH 60 PGFVAKPGSN YAVVSNRKEC WQGLEQDITS RISPGYTYSV SARVGVSGPM QGPADVLGTL 120 KLRYRDSLTD YLFIAKTTVS KEGWEKLEGT FTLLTMPDQV VFYLEGPSPG VDLLIESVVI 180 TCSSQSNFSN ICTPSDIAGD GDANIIINPK FEDGLNNWSG RGCKIALHDS MADGKIVPQS 240 GKIFASATER NQSWNGIQQE ITGRVQRKLA YEAIAVVRIF GNNVTSADVR ATLWVQTPDL 300 REQYIGIANL QATDKDWVQL QGKFLLNGNP KRVVIYLEGP PAGVDILVNS LVVKHAEKIP 360 PSPPPAIENP AYGVNIIQNS NLSDGTNGWF PLGNCNLSVA TGSPYILPPM ARDSLGPYEP 420 LSGRYILVTK RTQTWMGPAQ MITDNIKLLL TYQVSAWVKI SSGATGPQNV NVALGVDSQW 480 VNGGQVEISD NRWHEIGGSF RIEKQPSKVM VYVQGPAPGV DLMVAGLQIF PVDREARFKH 540 LRRQTDKIRK RNVILKFSGV DASSLHGTLV KVNQTQNSFP FGTCISRTNI DNEDFVSFFV 600 KNFNWAVFGN ELKWYWTEAQ QGNFNYRDAD EMLDICVKNK IETRGHCIFW EVEGTVQPWI 660 KALNKNDLMT AVQNRLTGLL TRYKGKFMHY DVNNEMLHGS FYQDRLGKDI RANMFKTANQ 720 LDQSATLFVN DYHVEDGDDT RSCPEKYITQ ILDLQEQGAP VGGIGIQGHI DSPVGPIVSS 780 ALDKLGILGL PIWFTELDVS SINEYVRGDD LEVMLREAYA HPAVEGIMLW GFWELFMSRD 840 NAHLVNAEGE LNEAGKRYLA LKEEWLTGSH GRINEQGEFS FRGFHGTYKV EIVTHSKKIT 900 ETFVVDKGDT PLVVNIDLK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 1.0e-16 | 374 | 518 | 152 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 1.0e-20 | 30 | 169 | 141 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 3.0e-32 | 557 | 832 | 299 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 1.0e-74 | 577 | 862 | 306 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 3.0e-75 | 612 | 857 | 267 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33301.1 | 0 | 1 | 918 | 1 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
RefSeq | XP_002283550.1 | 0 | 13 | 918 | 77 | 981 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301133.1 | 0 | 13 | 918 | 147 | 1049 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 30 | 524 | 2 | 479 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 204 | 529 | 2 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xyz_B | 7e-27 | 582 | 832 | 40 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 7e-27 | 582 | 832 | 40 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1x_A | 3e-26 | 581 | 831 | 18 | 268 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1w_A | 3e-26 | 581 | 831 | 18 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1nq6_A | 4e-26 | 581 | 853 | 15 | 291 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EB442796 | 298 | 402 | 699 | 0 |
EX570690 | 294 | 625 | 918 | 0 |
EX570691 | 281 | 625 | 905 | 0 |
EB442796 | 116 | 238 | 353 | 0.000008 |
EB442796 | 110 | 71 | 180 | 0.00002 |
Sequence Alignments (This image is cropped. Click for full image.) |
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