| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_001252m |
| Family | CBM22 |
| Protein Properties | Length: 920 Molecular Weight: 101839 Isoelectric Point: 5.9654 |
| Chromosome | Chromosome/Scaffold: 04260 Start: 355946 End: 360799 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 204 | 340 | 2.1e-31 |
| NIILNPKFEDGLNNWSGRGCKIVLHDSMADGKILPQSGKVFAAATERTQSWNGIQQEITGRVQRKLAYEAIAVVRIFGNNVTSADVRATLWVQTPDLREQ YIGIANLQATDKEWVQLQGKFLLNSNPKRVVIYIEGP | |||
| CBM22 | 30 | 167 | 7.9e-34 |
| NIIMNHDFSGGLCSWHPNSCCCSVVPAELGHPGFFTKPGGNYAVVSNRTECWQGLEQDITSRVSPGSTYSVSAYVGVSGLIQRPADVLATLKLEYRDSPT GYLFIGKTSVSKEKWEKLEGTFSLSTMPDRVVFYLEGP | |||
| CBM22 | 375 | 516 | 2.8026e-43 |
| NIIQNSNLSDGTNGWFPLGNCTLSVATGSPRILPPMARDSLGPQEPLSGRYILITKRTQTWMGPAQMITDKIKLFLTYQVSAWVKISSGASGPQIVNVAL GVDNQWVNGGQVEISDDRWHEIGGSFRIEKQPSKVMVYIQGP | |||
| GH10 | 573 | 850 | 0 |
| RQTQNAFPFGSCMSKTNLDNEDFVSFFVKNFNWAVFGNELKWYWTEAQKGNFNYRDADEMLDVCIKNNIETRGHCIFWEVEGAVQPWIKALNKNDLMTAV QNRLTGLLTRYKGKFRHYDVNNEMLHGSFYQDRLGKNIRAYMFKTANQLDPSATLFVNDYHVEDGNDTRSSPEKYIAQILDLQEQGAPVGGIGVQGHIDS PVGPIVCSALDKLGYLGLPIWFTELDVSSINEYIRGDDLEVMLREAFAHPAVEGIMLWGFWELFMSRDNAHLVNAEGE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 920 Download |
| MENPQSNNGN TKPEIVNQGM AGSNGNNASN IIMNHDFSGG LCSWHPNSCC CSVVPAELGH 60 PGFFTKPGGN YAVVSNRTEC WQGLEQDITS RVSPGSTYSV SAYVGVSGLI QRPADVLATL 120 KLEYRDSPTG YLFIGKTSVS KEKWEKLEGT FSLSTMPDRV VFYLEGPSPA VDLLIQSVVI 180 HCSSSSDFSY ASNQCEDTGD GDGNIILNPK FEDGLNNWSG RGCKIVLHDS MADGKILPQS 240 GKVFAAATER TQSWNGIQQE ITGRVQRKLA YEAIAVVRIF GNNVTSADVR ATLWVQTPDL 300 REQYIGIANL QATDKEWVQL QGKFLLNSNP KRVVIYIEGP PAGTDILINS LVVRHAEKIP 360 PSPRPVIENP AYGINIIQNS NLSDGTNGWF PLGNCTLSVA TGSPRILPPM ARDSLGPQEP 420 LSGRYILITK RTQTWMGPAQ MITDKIKLFL TYQVSAWVKI SSGASGPQIV NVALGVDNQW 480 VNGGQVEISD DRWHEIGGSF RIEKQPSKVM VYIQGPAPGV DLMVAGLHIF PVDREARFKH 540 LRIQTDKIRK CDVTLKVSGM DSGGFLGAFL KVRQTQNAFP FGSCMSKTNL DNEDFVSFFV 600 KNFNWAVFGN ELKWYWTEAQ KGNFNYRDAD EMLDVCIKNN IETRGHCIFW EVEGAVQPWI 660 KALNKNDLMT AVQNRLTGLL TRYKGKFRHY DVNNEMLHGS FYQDRLGKNI RAYMFKTANQ 720 LDPSATLFVN DYHVEDGNDT RSSPEKYIAQ ILDLQEQGAP VGGIGVQGHI DSPVGPIVCS 780 ALDKLGYLGL PIWFTELDVS SINEYIRGDD LEVMLREAFA HPAVEGIMLW GFWELFMSRD 840 NAHLVNAEGE VNEAGKRYLG LKEEWLTGAH GHLNEQGEFT FRGFPGAYEV EIFTLCKKFT 900 KTFVVDKGDT PVVVSIDLK* 960 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 6.0e-17 | 375 | 518 | 150 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 5.0e-22 | 35 | 170 | 139 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 4.0e-33 | 570 | 832 | 285 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 7.0e-77 | 577 | 857 | 301 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 1.0e-77 | 612 | 857 | 267 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX33301.1 | 0 | 1 | 918 | 1 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
| RefSeq | XP_002283550.1 | 0 | 17 | 918 | 81 | 981 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301133.1 | 0 | 16 | 918 | 150 | 1049 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 30 | 524 | 2 | 479 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 204 | 529 | 2 | 314 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1i1x_A | 3e-28 | 581 | 831 | 18 | 268 | A Chain A, Plant Carboxylesterase Aecxe1 From Actinidia Eriantha With Acyl Adduct |
| PDB | 1i1w_A | 3e-28 | 581 | 831 | 18 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 5e-28 | 581 | 831 | 18 | 268 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| PDB | 1k6a_A | 2e-27 | 581 | 831 | 18 | 268 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
| PDB | 1gor_A | 2e-27 | 581 | 831 | 18 | 268 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EB442796 | 298 | 402 | 699 | 0 |
| EX570690 | 294 | 625 | 918 | 0 |
| EL428755 | 279 | 579 | 857 | 0 |
| EB442796 | 112 | 69 | 180 | 0.00000003 |
| EB442796 | 116 | 238 | 353 | 0.000001 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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