| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_001320m |
| Family | CBM22 |
| Protein Properties | Length: 907 Molecular Weight: 100996 Isoelectric Point: 6.3681 |
| Chromosome | Chromosome/Scaffold: 04260 Start: 403981 End: 409127 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 190 | 326 | 1.6e-27 |
| NIIANPKFKDGLSNWSGRGCKLVLHESMAGGKIVPQCGKVFACATERTESWNGIEQELTGKIHRKLVYEVTAVVRIFGDNVTSADVRVTLWVQTTDLREE YICIAQLPATDKEWVQLKGKFLLNGYPIKVVIFIEGP | |||
| CBM22 | 32 | 169 | 2.1e-34 |
| NVITNHDFSQGQHSWHANGCSFSVVSAESGHPAFLTKRGGYYAVVSNRTESWQGLEQDITSIVSPGSTYYVTAYVGVSGHIQGTTDVQATLRVEYRNSPT DYLFIGRISLSKERWEKLEGKFSLPKKPDRAVFYLEGP | |||
| CBM22 | 361 | 502 | 2.20004e-41 |
| NIIQNSDFNDGTNGWFPLGSCTLNVAAGSPQVLPPMASNSLGHCEPLSGHYILVTERTDTWMGPAQIITDKIKLFLTYQISAWVKVGSCIDGPQTVNVAI GVDDEWVNGGNVEIRDDEWHEIGGSFRIEKQATKIMVYVQGP | |||
| GH10 | 557 | 841 | 0 |
| QVKQTQNTFPIGSCMSRTTIDNEDFVSFFIKNFNWAVFENELKWYWTEAERGKLNYKDADEMLDLCIKNNIATRGHCIFWGVEDAVQPWVKALNNNDLMA AVQNRLTDLLTRYKGKFRHYDVNNEMLHGSFYQDRLGKDIHAYMFKTANQLDPSPTLFVNDYHVEDGKDSRSTPEKYIAQILDLKEQGAPVGGIGIQGHI DSPVGPIVCAALDKLAELRLPIWFSELNLSSINEHIRGDDLEVMLREAFAHPAVEGIMFWGFWELFMSRENSHLVNADGEINEAG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 907 Download |
| MDQSTVGSYG DTAIKTIMDQ GISGSSGNTT INVITNHDFS QGQHSWHANG CSFSVVSAES 60 GHPAFLTKRG GYYAVVSNRT ESWQGLEQDI TSIVSPGSTY YVTAYVGVSG HIQGTTDVQA 120 TLRVEYRNSP TDYLFIGRIS LSKERWEKLE GKFSLPKKPD RAVFYLEGPS AAVDLLIQSV 180 VISSSPPKGN IIANPKFKDG LSNWSGRGCK LVLHESMAGG KIVPQCGKVF ACATERTESW 240 NGIEQELTGK IHRKLVYEVT AVVRIFGDNV TSADVRVTLW VQTTDLREEY ICIAQLPATD 300 KEWVQLKGKF LLNGYPIKVV IFIEGPSAGT DILVNNFFLK YAQKVPPSPR PVIQNPGYGV 360 NIIQNSDFND GTNGWFPLGS CTLNVAAGSP QVLPPMASNS LGHCEPLSGH YILVTERTDT 420 WMGPAQIITD KIKLFLTYQI SAWVKVGSCI DGPQTVNVAI GVDDEWVNGG NVEIRDDEWH 480 EIGGSFRIEK QATKIMVYVQ GPASGVDLMV AGLQIFAVDR EARFKHLKRQ TDKIRKRDIT 540 LRITGVDSGG FLGSYLQVKQ TQNTFPIGSC MSRTTIDNED FVSFFIKNFN WAVFENELKW 600 YWTEAERGKL NYKDADEMLD LCIKNNIATR GHCIFWGVED AVQPWVKALN NNDLMAAVQN 660 RLTDLLTRYK GKFRHYDVNN EMLHGSFYQD RLGKDIHAYM FKTANQLDPS PTLFVNDYHV 720 EDGKDSRSTP EKYIAQILDL KEQGAPVGGI GIQGHIDSPV GPIVCAALDK LAELRLPIWF 780 SELNLSSINE HIRGDDLEVM LREAFAHPAV EGIMFWGFWE LFMSRENSHL VNADGEINEA 840 GKRLLALKKE WLISEFHGHL NNKGEFTFRG FQGTYNVEIF GPCKKIAKTF VVDRGECPQV 900 VTIELK* 960 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 4.0e-17 | 360 | 505 | 155 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 2.0e-21 | 32 | 172 | 142 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 5.0e-30 | 587 | 818 | 253 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 5.0e-74 | 563 | 848 | 306 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 1.0e-74 | 598 | 844 | 268 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX33301.1 | 0 | 18 | 905 | 16 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
| RefSeq | XP_002283550.1 | 0 | 32 | 905 | 94 | 981 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301133.1 | 0 | 18 | 905 | 150 | 1049 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 32 | 510 | 2 | 479 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 190 | 515 | 2 | 314 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xyz_B | 2e-28 | 548 | 818 | 24 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 2e-28 | 548 | 818 | 24 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1nq6_A | 3e-25 | 567 | 839 | 15 | 291 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1i1x_A | 7e-25 | 588 | 838 | 39 | 289 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1i1w_A | 7e-25 | 588 | 838 | 39 | 289 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO850973 | 330 | 486 | 815 | 0 |
| GW865493 | 309 | 459 | 767 | 0 |
| EB442796 | 298 | 388 | 685 | 0 |
| EB442796 | 112 | 71 | 182 | 0.0000000009 |
| GW865493 | 46 | 289 | 334 | 7.2 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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