| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_002278m |
| Family | GT5 |
| Protein Properties | Length: 752 Molecular Weight: 83798.4 Isoelectric Point: 5.993 |
| Chromosome | Chromosome/Scaffold: 11341 Start: 603513 End: 610845 |
| Description | starch synthase 2 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 261 | 743 | 0 |
| NVILVAAECAPWSKTGGLGDVAGSLPKALARRGHRVMVVAPRYGNYVEPQDTGVRKRYKVDGQDFEVSYFQAFIDGVDFVFIDSPMFRHIGNDIYGGNRM DILKRMVLFCKAAVEVPWHVPCGGVCYGDGNLAFIANDWHTALLPVYLKAYYRDNGLMQYTRSVLVIHNIAHQGRGPVDDFSYVGLPEHYIDLFKLHDPI GGDHFNIFAAGLKVADRVVTVSHGYAWELKTSEGGWGLHNIINENDWKLQGIVNGIDAKEWNPQFDIQLTSDGYTNYSLETLDTGKPQCKAALQKELGLP IRPDVPVIGFIGRLDYQKGVDLIAEAIPWMVGQDVQLVMLGTGRQDLEEMLRQFENQHRDKVRGWVGFSVKTAHRITAGADILLMPSRFEPCGLNQLYAM MYGTIPVVHAVGGLRDTVQPFDPFNESGLGWTFDSAESHKLIHALGNCLLTYREYKKSWEGLQRRGMTQNLSWDHAAEKYEET | |||
| Full Sequence |
|---|
| Protein Sequence Length: 752 Download |
| MAFIGSLPFI IQTKAESSVL LHDKNLQRSR FSVFPCRSQN SFNLAVSLSL SFKPVRATGK 60 EGVSGDGSED TLQATIEKSK KVLALQRDLL QKIAERRKLV SSIQSSVGDH DTNKTSHEQR 120 ENSLPNSDNT STSDVNMHQQ QNGPVLPSSY VHSTADEVSE TASSAINRGH AKDDKELEQH 180 ASPRTAFVKN STKQFKEMDS EKLQTDEIPS FLSNTTDIST INEENSEHSN ESTSPMVDIF 240 ESDSMTEDMK PPPLAGDNVM NVILVAAECA PWSKTGGLGD VAGSLPKALA RRGHRVMVVA 300 PRYGNYVEPQ DTGVRKRYKV DGQDFEVSYF QAFIDGVDFV FIDSPMFRHI GNDIYGGNRM 360 DILKRMVLFC KAAVEVPWHV PCGGVCYGDG NLAFIANDWH TALLPVYLKA YYRDNGLMQY 420 TRSVLVIHNI AHQGRGPVDD FSYVGLPEHY IDLFKLHDPI GGDHFNIFAA GLKVADRVVT 480 VSHGYAWELK TSEGGWGLHN IINENDWKLQ GIVNGIDAKE WNPQFDIQLT SDGYTNYSLE 540 TLDTGKPQCK AALQKELGLP IRPDVPVIGF IGRLDYQKGV DLIAEAIPWM VGQDVQLVML 600 GTGRQDLEEM LRQFENQHRD KVRGWVGFSV KTAHRITAGA DILLMPSRFE PCGLNQLYAM 660 MYGTIPVVHA VGGLRDTVQP FDPFNESGLG WTFDSAESHK LIHALGNCLL TYREYKKSWE 720 GLQRRGMTQN LSWDHAAEKY EETLVAAKYQ W* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 3.0e-85 | 260 | 748 | 519 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 2.0e-136 | 260 | 742 | 506 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 2.0e-168 | 260 | 742 | 495 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 0 | 260 | 742 | 487 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 261 | 742 | 493 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF13168.1 | 0 | 1 | 751 | 1 | 751 | AF173900_1 granule bound starch synthase II precursor [Manihot esculenta] |
| GenBank | ABV25894.1 | 0 | 1 | 751 | 1 | 751 | starch synthase isoform II [Manihot esculenta] |
| RefSeq | XP_002278470.1 | 0 | 1 | 751 | 1 | 772 | PREDICTED: similar to starch synthase [Vitis vinifera] |
| RefSeq | XP_002324061.1 | 0 | 1 | 751 | 1 | 742 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002531856.1 | 0 | 1 | 751 | 1 | 754 | starch synthase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 260 | 745 | 10 | 509 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 3vue_A | 0 | 260 | 745 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 260 | 742 | 1 | 471 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 260 | 742 | 1 | 471 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 260 | 742 | 1 | 471 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO777841 | 319 | 434 | 752 | 0 |
| HO777841 | 398 | 55 | 442 | 0 |
| HO781048 | 394 | 359 | 752 | 0 |
| HO445868 | 438 | 315 | 752 | 0 |
| HO781048 | 41 | 319 | 359 | 0.16 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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