| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_003886m |
| Family | GT5 |
| Protein Properties | Length: 609 Molecular Weight: 68038.3 Isoelectric Point: 6.6858 |
| Chromosome | Chromosome/Scaffold: 09702 Start: 154965 End: 164538 |
| Description | starch synthase 4 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 109 | 602 | 0 |
| HIVHVTAEMAPIAKVGGLGDVVTGLARACLLRGHTVDIMLPFYECIQKQQISDLALITVYNSYHDGNWIPTNAHRGVVSGIPVIFIEPSNEFFKGQHVYG GSYNELEAYLFFSRACLEWMQVSGIQPDIIHVHEWQTGALPLLFWDMYQYLSLKKPRVILTIHNMEHYGECRQEQLSKCGLDGSVYATIDKALDDRTIGH NPERLSLLKGGIVYSNAVVTVSPTYLKETLCSRWLASTLIAHRDKYFGILNGIDTAMWNPATDVFLPAKFSGQNIEGKKLCKHYVQRGLGLASEGIISGN NVPDTMLKVPLVVCISRLVPQKGLHLITHAIKYIEELGGQMIVLGKASDSRFEGEFKHLAELHNHGPSIRILLMYSEELSHMLYAAADMVLVPSIYEPCG LSQLIGMRYGAIPVVRKTGGLADTVFDMDDQSNCEIANGFIFEGVDEGSLNWALDRAFAYYRDKPDEWNSTVQKVIEIDNSWNKTAGEYIKIYD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 609 Download |
| MLIMESALVG KFCKPCCFHS RKGVLRKRKG MATHHLFSSE FNIMSLLSST HPSVQAGALK 60 RESSAGFVTK ELVWPSPDDE IPFWKRDFPS WDASSEVPTD IVKDSNLLHI VHVTAEMAPI 120 AKVGGLGDVV TGLARACLLR GHTVDIMLPF YECIQKQQIS DLALITVYNS YHDGNWIPTN 180 AHRGVVSGIP VIFIEPSNEF FKGQHVYGGS YNELEAYLFF SRACLEWMQV SGIQPDIIHV 240 HEWQTGALPL LFWDMYQYLS LKKPRVILTI HNMEHYGECR QEQLSKCGLD GSVYATIDKA 300 LDDRTIGHNP ERLSLLKGGI VYSNAVVTVS PTYLKETLCS RWLASTLIAH RDKYFGILNG 360 IDTAMWNPAT DVFLPAKFSG QNIEGKKLCK HYVQRGLGLA SEGIISGNNV PDTMLKVPLV 420 VCISRLVPQK GLHLITHAIK YIEELGGQMI VLGKASDSRF EGEFKHLAEL HNHGPSIRIL 480 LMYSEELSHM LYAAADMVLV PSIYEPCGLS QLIGMRYGAI PVVRKTGGLA DTVFDMDDQS 540 NCEIANGFIF EGVDEGSLNW ALDRAFAYYR DKPDEWNSTV QKVIEIDNSW NKTAGEYIKI 600 YDSIRVRS* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02316 | PLN02316 | 1.0e-130 | 108 | 605 | 511 | + synthase/transferase | ||
| PRK00654 | glgA | 3.0e-162 | 108 | 605 | 508 | + glycogen synthase; Provisional | ||
| PLN02939 | PLN02939 | 6.0e-168 | 105 | 608 | 511 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 4.0e-174 | 108 | 604 | 501 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 109 | 601 | 499 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACD13790.1 | 0 | 12 | 607 | 29 | 614 | starch synthase VI precursor [Solanum lycopersicum] |
| GenBank | ACD13791.1 | 0 | 55 | 607 | 55 | 607 | starch synthase VI precursor [Vitis vinifera] |
| GenBank | ACL36485.1 | 0 | 70 | 607 | 117 | 655 | starch synthase VI precursor [Picea glauca] |
| RefSeq | XP_002268126.1 | 0 | 55 | 607 | 55 | 607 | PREDICTED: starch synthase VI [Vitis vinifera] |
| RefSeq | XP_002331426.1 | 0 | 2 | 608 | 1 | 618 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 108 | 605 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 108 | 606 | 1 | 478 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 108 | 606 | 1 | 478 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 108 | 606 | 1 | 478 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 108 | 606 | 1 | 478 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX373959 | 300 | 182 | 481 | 0 |
| GE474726 | 265 | 130 | 394 | 0 |
| CO474248 | 254 | 128 | 381 | 0 |
| DV993959 | 263 | 131 | 393 | 0 |
| DV438199 | 268 | 27 | 294 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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