| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_004573m |
| Family | AA7 |
| Protein Properties | Length: 569 Molecular Weight: 62295.7 Isoelectric Point: 6.5085 |
| Chromosome | Chromosome/Scaffold: 03777 Start: 43193 End: 60389 |
| Description | FAD-linked oxidases family protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 144 | 340 | 2.8e-26 |
| VHIPDVVVFPRSEEEVSNIVKSCDKHKVPIVPYGGATSIEGHTLSPHGGVCIDMSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGA TIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLVIGSEGTLGIITEVTLRLQKIPQHSVVAMCNFPTIKDAADV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 569 Download |
| MAAFALWLSR LRSSSKTACT SFRNSFLHNI RSETTLTTAN LIGSGTAKRP FLLWSSSLLP 60 LTLALSAGSL AFHFQPQPSL CDSSNLDSRI GGKGSTEFVV EGSHRKVPQE LIDELRAICQ 120 DNMTMDYEER YFHGKPQNSF HSAVHIPDVV VFPRSEEEVS NIVKSCDKHK VPIVPYGGAT 180 SIEGHTLSPH GGVCIDMSLM KSVKALHIED MDVVVEPGIG WMELNEYLEP YGLFFPLDPG 240 PGATIGGMCA TRCSGSLAVR YGTMRDNVIN LKVVLANGDV VKTASRARKS AAGYDLTRLV 300 IGSEGTLGII TEVTLRLQKI PQHSVVAMCN FPTIKDAADV AIATMLSGIQ VSRVELLDEV 360 QVRAINIANG KNLPEVPTLM FEFIGTEAYA REQTLIVQEI VSKHNGSDFV FAEQPEAKKE 420 LWKIRKEALW ACFAMEPKYE ALISDVCVPL SRLAELISRS KQELDASRLV CTVIAHAGDG 480 NFHTVILFDP SQEDDRQEAE RLNKFMVNAA LSMEGTCTGE HGVGTGKMKY LEKELGVEAL 540 KTMKRIKTAL DPNNIMNPGK LIPPHVCF* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK11230 | PRK11230 | 5.0e-51 | 146 | 567 | 430 | + glycolate oxidase subunit GlcD; Provisional | ||
| pfam02913 | FAD-oxidase_C | 2.0e-69 | 320 | 561 | 247 | + FAD linked oxidases, C-terminal domain. This domain has a ferredoxin-like fold. | ||
| TIGR00387 | glcD | 6.0e-97 | 150 | 560 | 419 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
| COG0277 | GlcD | 9.0e-124 | 114 | 564 | 465 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| PLN02805 | PLN02805 | 0 | 10 | 568 | 559 | + D-lactate dehydrogenase [cytochrome] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001142976.1 | 0 | 81 | 568 | 69 | 555 | hypothetical protein LOC100275430 [Zea mays] |
| RefSeq | NP_568170.1 | 0 | 54 | 568 | 49 | 567 | FAD linked oxidase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002267321.1 | 0 | 3 | 568 | 2 | 566 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002322755.1 | 0 | 90 | 568 | 1 | 480 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002524111.1 | 0 | 3 | 568 | 2 | 555 | d-lactate dehydrogenase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3pm9_F | 1.99965e-42 | 110 | 562 | 16 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_E | 1.99965e-42 | 110 | 562 | 16 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_D | 1.99965e-42 | 110 | 562 | 16 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_C | 1.99965e-42 | 110 | 562 | 16 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_B | 1.99965e-42 | 110 | 562 | 16 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| photorespiration | RXN-969 | EC-1.1.3 | glycolate oxidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX265038 | 322 | 162 | 482 | 0 |
| DY305587 | 368 | 201 | 568 | 0 |
| EX261606 | 322 | 218 | 535 | 0 |
| DT747637 | 285 | 190 | 474 | 0 |
| EX261606 | 50 | 516 | 565 | 0.11 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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