| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_005619m |
| Family | GH28 |
| Protein Properties | Length: 520 Molecular Weight: 56492.2 Isoelectric Point: 8.156 |
| Chromosome | Chromosome/Scaffold: 03823 Start: 100648 End: 105058 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 128 | 472 | 0 |
| AAACKVEASTVLVPSKYVFLVGPVSFSGPYCQANIVFQLDGTMVAPTNSNIWGKGLLWWIEFTKLKGITVQGTGTIDGSGSVWWQDYPFDDPLDDETKLI IPLNNTVEEHPPIPIRNEFSKKMPSIKPTALRFYGSFNATVSGITIQNSPQCHLKFDNCMGVVVHDISISSPGDSPNTDGIHLQNTKDVLVHSSNLACGD DCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMTGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRTCKNQ TSAVALSGINYEKIRGTYTVKPVHFACSDALPCLDVSLTTIELKP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 520 Download |
| MSGFSFRRLS FMLCIAFLVW CSSLDACMAR RGKHWRQNRA TSASLYKKKG KSHGSSHHNH 60 NGGSKPKTKP KIPSHKAPLP PPPSPPPKED APPSSSPTKG SATFNVLDFG AKGDGKSDDT 120 KAFQSAWAAA CKVEASTVLV PSKYVFLVGP VSFSGPYCQA NIVFQLDGTM VAPTNSNIWG 180 KGLLWWIEFT KLKGITVQGT GTIDGSGSVW WQDYPFDDPL DDETKLIIPL NNTVEEHPPI 240 PIRNEFSKKM PSIKPTALRF YGSFNATVSG ITIQNSPQCH LKFDNCMGVV VHDISISSPG 300 DSPNTDGIHL QNTKDVLVHS SNLACGDDCI SIQTGCSNVY VHNVNCGPGH GISIGSLGKD 360 NTKACVSNIT VRDVMMHNTM TGVRIKTWQG GSGSVQGVLF SNIQVSEVQL PIVIDQFYCD 420 KRTCKNQTSA VALSGINYEK IRGTYTVKPV HFACSDALPC LDVSLTTIEL KPLQEHYHMY 480 DPFCWQTFGE LNTPTTPPID CLQIGKPSSN RPQSDHDAC* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 1.0e-79 | 104 | 470 | 372 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-81 | 135 | 470 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 3.0e-81 | 100 | 471 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 2.0e-89 | 102 | 471 | 375 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 5.0e-100 | 104 | 498 | 400 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK95830.1 | 0 | 1 | 519 | 4 | 516 | unknown [Populus trichocarpa] |
| RefSeq | NP_563875.6 | 0 | 4 | 519 | 7 | 532 | polygalacturonase [Arabidopsis thaliana] |
| RefSeq | XP_002266600.1 | 0 | 1 | 519 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311773.1 | 0 | 1 | 519 | 4 | 517 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525361.1 | 0 | 1 | 519 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-23 | 180 | 422 | 96 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 3jur_D | 6e-21 | 105 | 418 | 29 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 6e-21 | 105 | 418 | 29 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 6e-21 | 105 | 418 | 29 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 6e-21 | 105 | 418 | 29 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
