| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_005673m |
| Family | AA7 |
| Protein Properties | Length: 517 Molecular Weight: 58363.4 Isoelectric Point: 5.1727 |
| Chromosome | Chromosome/Scaffold: 03386 Start: 22519 End: 24154 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 47 | 503 | 0 |
| NLRFASSATPKPLFIVTPTHVSHIQASIICCRIHGLEMRIRSGGHDYDGLSYISSVPFIILDMFNLRSVSVDVEDESAWVESGATLGEVYYWIAKQSMIH GYPAGVCPTVGVGGHLSGGGYGNMMRKHGLSVDNVLDAIIVDANGRVLDRESMGEDLFWAIRGGGGASFGVIVSWKIKLVQVPEIVTVFRVEKTLEQGAS DIVYQWQNVADKIDDDLFIRVVIMPVIKKDRETIKAKFNALFLGNAERLVALMDEQFPELGLTAKNCEEMSWIESVLFWSNYPNGTSADVLLERNPQSEK YLKRKSDYVQKPISKPDLESIWKKIMELKKITFTFNPYGGKMSGIPESETPFPHRAGNAYKIQYAVSWKDESIETENYNLEMIRKLYDYMTPFVSKTPRC SYLNYRDVDLGVNEVGNESYEEASQWGIKYFKGNFDRLVEVKSRVDPGNFFRYEQSI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 517 Download |
| MATPDPTEET FFLCLSTHSL LDPPISQVTY FPSNPQYTSV LQSYIRNLRF ASSATPKPLF 60 IVTPTHVSHI QASIICCRIH GLEMRIRSGG HDYDGLSYIS SVPFIILDMF NLRSVSVDVE 120 DESAWVESGA TLGEVYYWIA KQSMIHGYPA GVCPTVGVGG HLSGGGYGNM MRKHGLSVDN 180 VLDAIIVDAN GRVLDRESMG EDLFWAIRGG GGASFGVIVS WKIKLVQVPE IVTVFRVEKT 240 LEQGASDIVY QWQNVADKID DDLFIRVVIM PVIKKDRETI KAKFNALFLG NAERLVALMD 300 EQFPELGLTA KNCEEMSWIE SVLFWSNYPN GTSADVLLER NPQSEKYLKR KSDYVQKPIS 360 KPDLESIWKK IMELKKITFT FNPYGGKMSG IPESETPFPH RAGNAYKIQY AVSWKDESIE 420 TENYNLEMIR KLYDYMTPFV SKTPRCSYLN YRDVDLGVNE VGNESYEEAS QWGIKYFKGN 480 FDRLVEVKSR VDPGNFFRYE QSIPSLEASW KSSVEE* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG0277 | GlcD | 3.0e-14 | 39 | 250 | 225 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam08031 | BBE | 2.0e-17 | 447 | 504 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| pfam01565 | FAD_binding_4 | 2.0e-22 | 58 | 195 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN72775.1 | 0 | 1 | 506 | 21 | 500 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI31067.1 | 0 | 1 | 506 | 21 | 508 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002268682.1 | 0 | 1 | 506 | 21 | 526 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002300580.1 | 0 | 1 | 509 | 1 | 509 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002523156.1 | 0 | 1 | 509 | 1 | 510 | Reticuline oxidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4dns_B | 0 | 8 | 506 | 10 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 8 | 506 | 10 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3vte_A | 0 | 8 | 506 | 4 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 3tsj_B | 0 | 4 | 506 | 4 | 496 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 3tsj_A | 0 | 4 | 506 | 4 | 496 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO777438 | 514 | 2 | 506 | 0 |
| DY290183 | 366 | 90 | 451 | 0 |
| DY262774 | 379 | 125 | 498 | 0 |
| JK988562 | 307 | 19 | 323 | 0 |
| DY275452 | 317 | 188 | 504 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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