Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_006106m |
Family | PL1 |
Protein Properties | Length: 501 Molecular Weight: 54105 Isoelectric Point: 6.4991 |
Chromosome | Chromosome/Scaffold: 00224 Start: 190115 End: 194219 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 137 | 337 | 0 |
LWIIFSTSMAIKLRHELIFNSYKTIDGRGANVHITGNGCLTLQYVSHIIIHNIHIHNCKPSGNTNIASSPTHVGRRGRSDGDGISIFGSQKIWIDHCSLS YCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDRYVLDSGMQVTIAFNIFGEALVQRMPRCRRGYIHVVNNDFTYWEMYAIGGSASPTINSQGNRYV A |
Full Sequence |
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Protein Sequence Length: 501 Download |
MLPTLCILLI CLSSSFLLFI RATSSFNLSL PHQHPDPEAV AQDFQRRVNA SLSTRHLLST 60 QVNDQCITGN PIDDCWRCDP NWASNRQRLA DCVIGFGQGS LGGRGGQIYV VTDSSDHDPA 120 NPTPGTLRYG VIQNEPLWII FSTSMAIKLR HELIFNSYKT IDGRGANVHI TGNGCLTLQY 180 VSHIIIHNIH IHNCKPSGNT NIASSPTHVG RRGRSDGDGI SIFGSQKIWI DHCSLSYCTD 240 GLIDAIMGST GITISNNYFS HHDEVMLLGH DDRYVLDSGM QVTIAFNIFG EALVQRMPRC 300 RRGYIHVVNN DFTYWEMYAI GGSASPTINS QGNRYVAPAD PNAKEVTKRV ETEEREWADW 360 NWRTDGDILV NGAFFVPSGA GLSAQYAKAS SVEPRSAGLI SQLTMNAGVF GAPRDNSVGI 420 SNPGINGGTS TAGTTNTGSS GASSGDGDGD FLGMIFGSGA PPPTSNISIF FSLLIILILY 480 ICMVTNNGAR LSFPLLLVLL * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-18 | 224 | 333 | 121 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-51 | 152 | 335 | 206 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 6.0e-59 | 152 | 338 | 196 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ87025.1 | 0 | 27 | 481 | 24 | 494 | pectate lyase-like protein [Brassica napus] |
RefSeq | NP_196051.2 | 0 | 5 | 480 | 17 | 509 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002268818.1 | 0 | 1 | 462 | 1 | 465 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 2 | 414 | 3 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002534016.1 | 0 | 2 | 462 | 4 | 462 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 70 | 409 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 70 | 409 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-16 | 89 | 336 | 2 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 0.000000000000002 | 95 | 408 | 22 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 0.000000000000002 | 95 | 408 | 22 | 357 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |