| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_006215m |
| Family | GH28 |
| Protein Properties | Length: 497 Molecular Weight: 54228 Isoelectric Point: 6.3476 |
| Chromosome | Chromosome/Scaffold: 03581 Start: 1239969 End: 1242491 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 99 | 447 | 0 |
| ASDGGSQLYVPAGKWLTGSFSLTSHFTLFLHKDAVLLASQNLNEWPLLKPLPSYGRGRDAAAGRYASLIFGTNLTDVIIAGDNGTIDGQGAFWWQKFHQG KLKYTRPYLIEIMYSDGIQISNLTLLNSPSWNVHPVYSSDILVQGITILAPVRSPNTDGINPDSCTNVKIEDCYIVSGDDCVAVKSGWDEYGIAFGMPTK QLIIRRLTCISPYSATIALGSEMSGGIQDVRAEDITAINTESGVRIKTAVGRGGYVKDIYVKRMIMHTMKWAFWMTGNYGSHADKNYDPNALPVIQGINY RDMVADNVSMAARLEGISGDPFKEICISNVTIGMAAKAKKIPWTCTEIE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 497 Download |
| MPCNKSLIHP LSATAMELLW ISPVKPRAAN VVTVLVVLAL LSVKGAESRK GRILESFEYN 60 AMSCRAHSAS ITDFGGVGDG QTSNTKAFQD AIDHLSQYAS DGGSQLYVPA GKWLTGSFSL 120 TSHFTLFLHK DAVLLASQNL NEWPLLKPLP SYGRGRDAAA GRYASLIFGT NLTDVIIAGD 180 NGTIDGQGAF WWQKFHQGKL KYTRPYLIEI MYSDGIQISN LTLLNSPSWN VHPVYSSDIL 240 VQGITILAPV RSPNTDGINP DSCTNVKIED CYIVSGDDCV AVKSGWDEYG IAFGMPTKQL 300 IIRRLTCISP YSATIALGSE MSGGIQDVRA EDITAINTES GVRIKTAVGR GGYVKDIYVK 360 RMIMHTMKWA FWMTGNYGSH ADKNYDPNAL PVIQGINYRD MVADNVSMAA RLEGISGDPF 420 KEICISNVTI GMAAKAKKIP WTCTEIEGIT SGVTPRPCDL LPDQRPEELT ECDFPPEDIP 480 IDSVKLQKCS YGMHYM* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 6.0e-21 | 70 | 357 | 305 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-24 | 49 | 430 | 402 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 2.0e-26 | 66 | 357 | 301 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-29 | 173 | 365 | 198 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 7.0e-58 | 69 | 364 | 319 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| Swiss-Prot | A7PZL3 | 0 | 46 | 495 | 40 | 489 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
| RefSeq | XP_002277736.1 | 0 | 46 | 495 | 28 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002278930.1 | 0 | 44 | 496 | 28 | 480 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301370.1 | 0 | 40 | 496 | 14 | 470 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002511903.1 | 0 | 16 | 496 | 1 | 472 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 4.2039e-45 | 67 | 430 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 4.2039e-45 | 67 | 430 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 4.2039e-45 | 67 | 430 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 4.2039e-45 | 67 | 430 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 3e-16 | 85 | 430 | 26 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| ES810566 | 331 | 163 | 493 | 0 |
| GR218861 | 281 | 217 | 497 | 0 |
| GR218859 | 281 | 217 | 497 | 0 |
| GR218860 | 281 | 217 | 497 | 0 |
| GR218862 | 281 | 217 | 497 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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