| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_006279m |
| Family | GH28 |
| Protein Properties | Length: 494 Molecular Weight: 55196.4 Isoelectric Point: 9.1465 |
| Chromosome | Chromosome/Scaffold: 09570 Start: 113850 End: 120962 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 106 | 454 | 0 |
| KKGGGQLNVPPGRWLTAPFNLTSHMTLFLADDAVILGIEDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQNLKDVVITGHNGTINGQGQTWWKKYRQKL LNHTRGPLVQIMWSSDILIANITLKDSPFWTLHPYDCKNVTIRNVTILAPVIGAPNTDGIDPDSCEDMIIENCYISVGDDGIAIKSGWDQYGIAYGRPSM NILIRNLVVRSMVSAGVSIGSEMSGGVSNITVENLIVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRVGIVIKTDYNEHPDEGYDRKAVPKLEDISF TGVHGQGVRVPVRIHGSEDIPVRNVSFRDMSVGITYKKKHIFQCAFVQG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 494 Download |
| MMVETAPLGR FQYQRLELKR WVPAFLSSHK TLFTVLWIAA FASVFVWQRN VVGGGFAVFW 60 RVPMRPMPRL RPVAFNLTDF GGVGDGVTLN TEAFERAVLA ISKLGKKGGG QLNVPPGRWL 120 TAPFNLTSHM TLFLADDAVI LGIEDEKYWP LMPPLPSYGY GREHPGPRYG SLIHGQNLKD 180 VVITGHNGTI NGQGQTWWKK YRQKLLNHTR GPLVQIMWSS DILIANITLK DSPFWTLHPY 240 DCKNVTIRNV TILAPVIGAP NTDGIDPDSC EDMIIENCYI SVGDDGIAIK SGWDQYGIAY 300 GRPSMNILIR NLVVRSMVSA GVSIGSEMSG GVSNITVENL IVWSSRRAVR IKTAPGRGGY 360 VRHITYRNLT FDNVRVGIVI KTDYNEHPDE GYDRKAVPKL EDISFTGVHG QGVRVPVRIH 420 GSEDIPVRNV SFRDMSVGIT YKKKHIFQCA FVQGRVIGTI FPAPCENLDR YDEQEHLIKH 480 SVSQNLTDID YDF* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 3.0e-22 | 76 | 430 | 372 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-28 | 75 | 487 | 430 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 7.0e-33 | 74 | 437 | 377 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-38 | 173 | 444 | 278 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-67 | 74 | 388 | 338 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN69988.1 | 0 | 2 | 493 | 1 | 509 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002277239.1 | 0 | 2 | 493 | 1 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002324728.1 | 0 | 2 | 493 | 1 | 495 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002326133.1 | 0 | 2 | 493 | 1 | 495 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516244.1 | 0 | 1 | 493 | 1 | 494 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 68 | 434 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 68 | 434 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 68 | 434 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 68 | 434 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 4e-18 | 119 | 419 | 52 | 354 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778855 | 448 | 2 | 449 | 0 |
| FN769574 | 320 | 149 | 468 | 0 |
| FE707848 | 301 | 76 | 376 | 0 |
| EX126330 | 298 | 140 | 437 | 0 |
| CX102356 | 331 | 130 | 460 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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