| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_006317m |
| Family | GH28 |
| Protein Properties | Length: 493 Molecular Weight: 55426.6 Isoelectric Point: 9.4976 |
| Chromosome | Chromosome/Scaffold: 10493 Start: 390924 End: 396202 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 105 | 453 | 0 |
| KKGGGQLNVPPGRWLTAPFNLTSHMTLFLAEDGVVLGIEDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQNLKDVVITGHNGTINGQGQTWWKKYRQKL LNHTRGPLVQIMWSSDILITNITLRDSPFWTLHPYDCKNVTVRDVTILAPIYEAPNTDGIDPDSCEDMVIENCYISVGDDGIAIKSGWDQYGIAYGRPSM NILIRNLVVRSMVSAGVSIGSEMSGGVSNVTVENLHVWSSRRAVRIKTAPGRGGYVRRITYRNLTFDNVRVGIIIKTDYNEHPDQGYDPKAVPKLEDISF TGVHGQGVRVPVRIHGSEEIPVRNVTFRDMSVGITYKKKHIFQCSFVQG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 493 Download |
| MIERPPLGRF QYHRLEFKRR VPAFLSSHKT LFTVLWITAF ASVFVWQRNI VGSGFTVFWR 60 VPMRPIPRLR PVVFNLTDFG GVGDGITLNT EAFERAVLAI SKLGKKGGGQ LNVPPGRWLT 120 APFNLTSHMT LFLAEDGVVL GIEDEKYWPL MPPLPSYGYG REHPGPRYGS LIHGQNLKDV 180 VITGHNGTIN GQGQTWWKKY RQKLLNHTRG PLVQIMWSSD ILITNITLRD SPFWTLHPYD 240 CKNVTVRDVT ILAPIYEAPN TDGIDPDSCE DMVIENCYIS VGDDGIAIKS GWDQYGIAYG 300 RPSMNILIRN LVVRSMVSAG VSIGSEMSGG VSNVTVENLH VWSSRRAVRI KTAPGRGGYV 360 RRITYRNLTF DNVRVGIIIK TDYNEHPDQG YDPKAVPKLE DISFTGVHGQ GVRVPVRIHG 420 SEEIPVRNVT FRDMSVGITY KKKHIFQCSF VQGRVIGTTF PAPCENLDHY DEQERPIKLA 480 VSRNLTNVDY DF* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 6.0e-24 | 71 | 436 | 383 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-30 | 31 | 464 | 462 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 3.0e-33 | 74 | 436 | 384 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-39 | 172 | 443 | 278 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-67 | 73 | 394 | 345 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN69988.1 | 0 | 1 | 492 | 1 | 509 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002277239.1 | 0 | 1 | 492 | 1 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002324728.1 | 0 | 2 | 492 | 5 | 495 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002326133.1 | 0 | 2 | 492 | 5 | 495 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516244.1 | 0 | 1 | 492 | 2 | 494 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 67 | 433 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 67 | 433 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 67 | 433 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 67 | 433 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 6e-18 | 118 | 431 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778855 | 448 | 1 | 448 | 0 |
| FN769574 | 320 | 148 | 467 | 0 |
| FE707848 | 301 | 75 | 375 | 0 |
| DY291517 | 344 | 19 | 358 | 0 |
| FC882267 | 296 | 19 | 313 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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