| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_006540m |
| Family | PL1 |
| Protein Properties | Length: 485 Molecular Weight: 53333.3 Isoelectric Point: 5.6628 |
| Chromosome | Chromosome/Scaffold: 11069 Start: 366989 End: 369712 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 139 | 337 | 0 |
| IVFPSNMLIRLSQELIFNSFKTLDGRGANVHIVGGGCITLQYITNVIIHNIHIHHCVPSGNTNVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHC KDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEELVQRMPRCRRGYIHVVNNDFTRWEMYAIGGSGNPTINSQANRYTA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 485 Download |
| MLLMNCIVPI LLLSLFSPLG LAMLNLTFPN PHPNPEEVAQ EVQRRVNASM SRRQMLQISE 60 KDQSTCLTGN PIDDCWKCDP DWANNRQRLA DCAIGFGQYA LGGKNGEYYI VTDSSDDDAV 120 NPKPGTLRYA VIQEEPLWIV FPSNMLIRLS QELIFNSFKT LDGRGANVHI VGGGCITLQY 180 ITNVIIHNIH IHHCVPSGNT NVRSSPTHYG YRTKSDGDGI SIFGSKDIWI DHCSLSHCKD 240 GLIDAVMGST GITISNNYFS HHNEVMLLGH SDDYLPDSGM QVTIAFNHFG EELVQRMPRC 300 RRGYIHVVNN DFTRWEMYAI GGSGNPTINS QANRYTAPAD RNAKEVTKRV DTAEGGWKDW 360 NWRSEGDILV NGAFFVASGE GLEVKYEKAY SVEPKSAAFI DLITMHAGVL GVGGRDNNLG 420 MWSTGANGVG GGGTGEDSGY YYLDDYSGSS SPLLPPSTYG LFTIFIAMFC LISFHIMIAL 480 VSML* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-22 | 102 | 333 | 254 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 6.0e-60 | 140 | 335 | 204 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-69 | 144 | 338 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM61400.1 | 0 | 1 | 479 | 1 | 474 | pectate lyase-like protein [Arabidopsis thaliana] |
| EMBL | CAB64222.1 | 0 | 21 | 479 | 3 | 455 | pectate lyase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_566979.1 | 0 | 1 | 479 | 2 | 475 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002265853.1 | 0 | 1 | 424 | 115 | 537 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002519460.1 | 0 | 1 | 484 | 1 | 483 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 70 | 410 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 70 | 410 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 4e-16 | 139 | 313 | 50 | 214 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000000007 | 163 | 310 | 138 | 299 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1bn8_A | 0.0000000000005 | 160 | 310 | 151 | 314 | A Chain A, Bacillus Subtilis Pectate Lyase |
