y
Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_006566m |
Family | GH28 |
Protein Properties | Length: 484 Molecular Weight: 52215.6 Isoelectric Point: 4.4036 |
Chromosome | Chromosome/Scaffold: 00708 Start: 38404 End: 40389 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 113 | 439 | 0 |
KAACAVESGVVLAPEGYVFMITSTIFSGPCKPGLVFQVDGCLMPPDGPDSWPEKDSRKQWLVFYRLNDMTFTGKGTIEGNGEKWWDLPCKPHRGPDGEAS KGPCDSPALIRFFMSSNLVISNLRIQNSPQFHMKFDGCEGVLIQQLSISSPKLSPNTDGIHIENTKTVGIYNSLISNGDDCISIGTGCSDVDIEGVTCGP SHGISIGSLGVHNSQACVSNIKVSNAIIRDSDNGVRIKTWQGGTGSVSGISFQNIQMENVRNCMIIDQYYCMSKECLNQTSAVYVTDISYRNIKGTYDVR TPPIHFACSDTVPCTNITLSEVELLPE |
Full Sequence |
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Protein Sequence Length: 484 Download |
MELFRGLVVI SLLVIILLQN SSNVQGRYHY HKTKNKSHNK AESPVSPAPD NVPEPQDPSV 60 PSSPVNPPQI PSDPYPNDPA GNSSSDCIFD VTSYGAVGDG STDDTSAFVA AWKAACAVES 120 GVVLAPEGYV FMITSTIFSG PCKPGLVFQV DGCLMPPDGP DSWPEKDSRK QWLVFYRLND 180 MTFTGKGTIE GNGEKWWDLP CKPHRGPDGE ASKGPCDSPA LIRFFMSSNL VISNLRIQNS 240 PQFHMKFDGC EGVLIQQLSI SSPKLSPNTD GIHIENTKTV GIYNSLISNG DDCISIGTGC 300 SDVDIEGVTC GPSHGISIGS LGVHNSQACV SNIKVSNAII RDSDNGVRIK TWQGGTGSVS 360 GISFQNIQME NVRNCMIIDQ YYCMSKECLN QTSAVYVTDI SYRNIKGTYD VRTPPIHFAC 420 SDTVPCTNIT LSEVELLPEE GELIDDPFCW NAYGTEETVT IPPLNCLRDG EPESEGEVAS 480 YGC* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-67 | 89 | 467 | 386 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 4.0e-69 | 79 | 463 | 401 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 2.0e-86 | 91 | 436 | 350 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 4.0e-87 | 122 | 436 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-109 | 74 | 471 | 401 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK95305.1 | 0 | 1 | 483 | 1 | 475 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
RefSeq | NP_175244.1 | 0 | 1 | 483 | 1 | 475 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002263668.1 | 0 | 1 | 483 | 1 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312305.1 | 0 | 1 | 483 | 1 | 482 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519290.1 | 0 | 1 | 483 | 1 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 1e-23 | 146 | 436 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-23 | 146 | 436 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-23 | 146 | 436 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-23 | 146 | 436 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 1e-23 | 146 | 436 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |