y
Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_006659m |
Family | PL1 |
Protein Properties | Length: 481 Molecular Weight: 51923.3 Isoelectric Point: 6.1346 |
Chromosome | Chromosome/Scaffold: 02598 Start: 44113 End: 48234 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 137 | 336 | 0 |
WIIFSTSMTIKLKHELIVNSYKTIDGRGATVHITGNGCITLQYVSHIIIHNIHVYNCKPSGNTNIASSPTHVGYRGRSDGDGISIYGSQKIWIDHCTLAS CTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDGYILDSGMQVTIAFNIFGEALVQRMPRCRRGYIHVVNNDFTYWEMYAIGGSGNPTINSQGNRYIA |
Full Sequence |
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Protein Sequence Length: 481 Download |
MVPNFYILLI CLSTFSLLFN GATSFYLSLP HQHPDPEAVA YDVQRRVDDS ISVRQLLSTQ 60 EKDKCKTGNP IDDCWRCDSN WSNNRQRLAD CVIGFGQGAL GGKGGQIYIV TDSSDRDPAN 120 PTPGTLRYGV IQDEPLWIIF STSMTIKLKH ELIVNSYKTI DGRGATVHIT GNGCITLQYV 180 SHIIIHNIHV YNCKPSGNTN IASSPTHVGY RGRSDGDGIS IYGSQKIWID HCTLASCTDG 240 LIDAIMGSTG ITISNNYFSH HDEVMLLGHD DGYILDSGMQ VTIAFNIFGE ALVQRMPRCR 300 RGYIHVVNND FTYWEMYAIG GSGNPTINSQ GNRYIAPADP NAKEVTKRVD TNEGWADWNW 360 RTDGDIMVNG AFFVPSGAGL SAQYAKASSV EPKSAGIINQ LTMNAGVFGG PRHESFSGPG 420 FSGYGSSTGT TNTGSVGSSG GDSDYFGMIF GSGAPQPTCA SSIFLCILIL CTCMVGNILS 480 * 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam05048 | NosD | 0.001 | 159 | 260 | 102 | + Periplasmic copper-binding protein (NosD). NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain. | ||
COG3866 | PelB | 8.0e-23 | 141 | 332 | 204 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-63 | 149 | 334 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-72 | 144 | 337 | 205 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ87025.1 | 0 | 27 | 479 | 25 | 498 | pectate lyase-like protein [Brassica napus] |
RefSeq | NP_196051.2 | 0 | 10 | 469 | 17 | 508 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002268818.1 | 0 | 27 | 454 | 28 | 459 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 2 | 412 | 3 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002534016.1 | 0 | 3 | 457 | 5 | 464 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 69 | 407 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 69 | 407 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-16 | 88 | 335 | 2 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 0.0000000000003 | 223 | 406 | 151 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 0.0000000000003 | 223 | 406 | 151 | 357 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |