| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_006790m |
| Family | GH28 |
| Protein Properties | Length: 476 Molecular Weight: 51827.8 Isoelectric Point: 8.1211 |
| Chromosome | Chromosome/Scaffold: 03823 Start: 100648 End: 105058 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 112 | 428 | 0 |
| KGDGKSDDTKLDGTMVAPTNSNIWGKGLLWWIEFTKLKGITVQGTGTIDGSGSVWWQDYPFDDPLDDETKLIIPLNNTVEEHPPIPIRNEFSKKMPSIKP TALRFYGSFNATVSGITIQNSPQCHLKFDNCMGVVVHDISISSPGDSPNTDGIHLQNTKDVLVHSSNLACGDDCISIQTGCSNVYVHNVNCGPGHGISIG SLGKDNTKACVSNITVRDVMMHNTMTGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRTCKNQTSAVALSGINYEKIRGTYTVKPVHFACS DALPCLDVSLTTIELKP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 476 Download |
| MSGFSFRRLS FMLCIAFLVW CSSLDACMAR RGKHWRQNRA TSASLYKKKG KSHGSSHHNH 60 NGGSKPKTKP KIPSHKAPLP PPPSPPPKED APPSSSPTKG SATFNVLDFG AKGDGKSDDT 120 KLDGTMVAPT NSNIWGKGLL WWIEFTKLKG ITVQGTGTID GSGSVWWQDY PFDDPLDDET 180 KLIIPLNNTV EEHPPIPIRN EFSKKMPSIK PTALRFYGSF NATVSGITIQ NSPQCHLKFD 240 NCMGVVVHDI SISSPGDSPN TDGIHLQNTK DVLVHSSNLA CGDDCISIQT GCSNVYVHNV 300 NCGPGHGISI GSLGKDNTKA CVSNITVRDV MMHNTMTGVR IKTWQGGSGS VQGVLFSNIQ 360 VSEVQLPIVI DQFYCDKRTC KNQTSAVALS GINYEKIRGT YTVKPVHFAC SDALPCLDVS 420 LTTIELKPLQ EHYHMYDPFC WQTFGELNTP TTPPIDCLQI GKPSSNRPQS DHDAC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 5.0e-59 | 104 | 426 | 372 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-63 | 100 | 427 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 9.0e-71 | 102 | 427 | 373 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-74 | 110 | 426 | 319 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 1.0e-77 | 104 | 454 | 399 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK95830.1 | 0 | 1 | 475 | 4 | 516 | unknown [Populus trichocarpa] |
| RefSeq | XP_002266600.1 | 0 | 1 | 475 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311773.1 | 0 | 1 | 475 | 4 | 517 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002314612.1 | 0 | 121 | 475 | 28 | 382 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525361.1 | 0 | 1 | 475 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-23 | 136 | 378 | 96 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 6e-19 | 224 | 400 | 113 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 6e-19 | 224 | 400 | 113 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 6e-19 | 224 | 400 | 113 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 6e-19 | 224 | 400 | 113 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
