| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_007003m |
| Family | GH28 |
| Protein Properties | Length: 469 Molecular Weight: 50848.5 Isoelectric Point: 4.6159 |
| Chromosome | Chromosome/Scaffold: 10173 Start: 122051 End: 124707 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 71 | 419 | 0 |
| SSDGGSQLYVPAGRWLTGSFNLTSHFTLYLDKDAVLIASQDESEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVIITGANATIDGQGDVWWKKFRNG ELNYTRPYLIEILYSSNIQISNLTLINSPSWNVHPVYSSNVVAQGLTILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAFGMPTK QLVIRRLTCISPFSAAIALGSEMSGGIQDVRAEDITAIDTESGVRIKTSVGRGGFVKDIYVRKMTMKTMKWVFWMTGNYGSHPDNNYDPNAIPEIKNINY RDMVAENVTMAARLEGIAGDPFTGICISNVTIGLTQKPKKLQWNCTEIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 469 Download |
| MDAVVVIGVL LFLCTSGVDG KISPKLEFFE YPAISCRAHE ASLTDFGGVG DGETSNTKVF 60 QAAIDHLSQF SSDGGSQLYV PAGRWLTGSF NLTSHFTLYL DKDAVLIASQ DESEWPVIEP 120 LPSYGRGRDT EGGRYSSLIF GTNLTDVIIT GANATIDGQG DVWWKKFRNG ELNYTRPYLI 180 EILYSSNIQI SNLTLINSPS WNVHPVYSSN VVAQGLTILA PVTSPNTDGI NPDSCTNTRI 240 EDCYIVSGDD CVAVKSGWDE YGIAFGMPTK QLVIRRLTCI SPFSAAIALG SEMSGGIQDV 300 RAEDITAIDT ESGVRIKTSV GRGGFVKDIY VRKMTMKTMK WVFWMTGNYG SHPDNNYDPN 360 AIPEIKNINY RDMVAENVTM AARLEGIAGD PFTGICISNV TIGLTQKPKK LQWNCTEIAG 420 LSSGVTPKPC DLLTDQGPGE TASCNFPEDG LPIQNIEVKM CSSSRKNL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 3.0e-22 | 4 | 430 | 453 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-22 | 42 | 402 | 380 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 4.0e-23 | 43 | 340 | 309 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-27 | 139 | 402 | 270 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-57 | 40 | 337 | 321 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002278930.1 | 0 | 15 | 468 | 27 | 480 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002299511.1 | 0 | 1 | 467 | 13 | 479 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301370.1 | 0 | 12 | 462 | 14 | 464 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002303605.1 | 0 | 9 | 463 | 12 | 466 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509850.1 | 0 | 1 | 468 | 13 | 480 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 26 | 402 | 15 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 26 | 402 | 15 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 26 | 402 | 15 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 26 | 402 | 15 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 6e-19 | 57 | 376 | 26 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
