| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_007421m |
| Family | GH28 |
| Protein Properties | Length: 455 Molecular Weight: 49537 Isoelectric Point: 5.3686 |
| Chromosome | Chromosome/Scaffold: 01945 Start: 361095 End: 364497 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 73 | 415 | 0 |
| KGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGAVILGSQDPSHWDVVEPLPSYGRGIELPGKRYRSLINGYKLRDVVITGDNGTIDGQGSVWWDWFNSHYL NYSRPHLVEFIESEHLVVSNLTFLNAPAYNIHPVYCSNVLVQNMSLSAPPKSPYTVGIVPDSSNNVCIEDSIIEMGYDAVALKSGWDEYGISYDRATRDV HIRRVHLQSSSGSSIAFGSEMSGGIANVLVEQVHLYNSFSGVEFRTTKGRGGYIKRIHISDVEMENINLALGAIGDRGLHPDDKFDPNALPVLDQITLQN VTGKNISIAGNFTGIQESPFTSICLFNVSLIVSASSNSWICSS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 455 Download |
| MQMPVALLLL LALSIAIGIN GERSSGQCDY RPSLEPRPHS VSILEFGAVA DGKTLNTIAF 60 QNAIFYLKSF ADKGGAQLYV PPGKWLTGSF NLTSHLTLFL EKGAVILGSQ DPSHWDVVEP 120 LPSYGRGIEL PGKRYRSLIN GYKLRDVVIT GDNGTIDGQG SVWWDWFNSH YLNYSRPHLV 180 EFIESEHLVV SNLTFLNAPA YNIHPVYCSN VLVQNMSLSA PPKSPYTVGI VPDSSNNVCI 240 EDSIIEMGYD AVALKSGWDE YGISYDRATR DVHIRRVHLQ SSSGSSIAFG SEMSGGIANV 300 LVEQVHLYNS FSGVEFRTTK GRGGYIKRIH ISDVEMENIN LALGAIGDRG LHPDDKFDPN 360 ALPVLDQITL QNVTGKNISI AGNFTGIQES PFTSICLFNV SLIVSASSNS WICSSVVGFS 420 ESVFPEPCPE LMSRYSNSSA CYSLLVSYGE SASL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 3.0e-13 | 27 | 428 | 442 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 3.0e-19 | 39 | 425 | 396 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-19 | 139 | 375 | 248 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 6.0e-22 | 31 | 339 | 327 | + polygalacturonase ADPG | ||
| COG5434 | PGU1 | 6.0e-43 | 41 | 392 | 389 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI22951.1 | 0 | 16 | 429 | 14 | 428 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273305.1 | 0 | 1 | 429 | 1 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002314352.1 | 0 | 14 | 437 | 12 | 435 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002328589.1 | 0 | 1 | 454 | 1 | 450 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516982.1 | 0 | 3 | 454 | 1 | 454 | Polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 4e-29 | 39 | 407 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 4e-29 | 39 | 407 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 4e-29 | 39 | 407 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 4e-29 | 39 | 407 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.000000000000001 | 29 | 339 | 2 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
