| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_007446m |
| Family | GH28 |
| Protein Properties | Length: 454 Molecular Weight: 50325.5 Isoelectric Point: 4.9896 |
| Chromosome | Chromosome/Scaffold: 10560 Start: 33640 End: 36686 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 104 | 436 | 0 |
| EEACSSEEGAVIVVPEKKYRLKPVRFSGPCKSNITVQIYGIIEASDDRSDYEEDERHWLVFDKVENLLVEGGGTIDGNGNIWWQNSCKVDKDLPCKDAPT ALTFYRCQNLVVDNLTIQNAQQMHISFQRSKDVQVSNLNVTSPEHSPNTDGIHVTHTNNIQIANSSIGTGDDCISIVSGSQNVQAKNISCGPGHGISIGS LGSRHSKDYVSEVTIDGAEISGTTNGVRIKTWQGGSGIAKNIKFQNIEMHNVSNPIIINQYYCDHHKPCKEQKSAVKVKNVMYKNIKGTSATEVAIKFEC SKAYPCQDILLQDVVLETEEAYQTAKALCNNVN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 454 Download |
| MPLQGLHLYL FFFIIIIFFA IIPCYYCLQG DTLNHYLQEE DGYDSGAYPS YINSIEDGHF 60 KVKIFDDKVG SISTSVHKVN VDDFKPNFDN NHDDDTEAFE KAWEEACSSE EGAVIVVPEK 120 KYRLKPVRFS GPCKSNITVQ IYGIIEASDD RSDYEEDERH WLVFDKVENL LVEGGGTIDG 180 NGNIWWQNSC KVDKDLPCKD APTALTFYRC QNLVVDNLTI QNAQQMHISF QRSKDVQVSN 240 LNVTSPEHSP NTDGIHVTHT NNIQIANSSI GTGDDCISIV SGSQNVQAKN ISCGPGHGIS 300 IGSLGSRHSK DYVSEVTIDG AEISGTTNGV RIKTWQGGSG IAKNIKFQNI EMHNVSNPII 360 INQYYCDHHK PCKEQKSAVK VKNVMYKNIK GTSATEVAIK FECSKAYPCQ DILLQDVVLE 420 TEEAYQTAKA LCNNVNLAEL GLVLPQCPSL SSM* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 1.0e-84 | 94 | 452 | 367 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 2.0e-102 | 75 | 448 | 380 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-119 | 107 | 435 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 6.0e-141 | 94 | 452 | 361 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 5.0e-147 | 79 | 447 | 372 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF71160.1 | 0 | 1 | 448 | 1 | 456 | AF152758_1 polygalacturonase A [Actinidia chinensis] |
| Swiss-Prot | P35336 | 0 | 6 | 447 | 1 | 455 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| RefSeq | XP_002308956.1 | 0 | 16 | 448 | 1 | 443 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002322711.1 | 0 | 25 | 447 | 22 | 452 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529616.1 | 0 | 25 | 448 | 32 | 474 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-27 | 172 | 426 | 113 | 368 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 4e-18 | 175 | 399 | 77 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 4e-18 | 175 | 399 | 77 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 4e-18 | 175 | 399 | 77 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 4e-18 | 175 | 399 | 77 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
