| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_007516m |
| Family | PL1 |
| Protein Properties | Length: 451 Molecular Weight: 49344.6 Isoelectric Point: 7.7361 |
| Chromosome | Chromosome/Scaffold: 01551 Start: 92609 End: 96764 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 164 | 369 | 0 |
| IQDEPLWIVFKRDMVIQLKQELIMNSFKTIDGRGVNVHIANGGCITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAISIFGSSHIWID HNSLSHCADGLVDAVMGSTAITISNNHLTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ GNRYNA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 451 Download |
| MAMALPSKWV CVCATVLVVM FVGVAATVRN DEISGLTRNV ETEKSQSSNN SSTAASAAEV 60 TEGWKNERAV DDPEEVVAMV EMSIRNSTER RKLGYFSCGT GNPIDDCWRC DPNWQKNRKR 120 LAECGIGFGR NAIGGRDGRF YVVTDPSDDD AVNPKPGTLR HAVIQDEPLW IVFKRDMVIQ 180 LKQELIMNSF KTIDGRGVNV HIANGGCITI QFITNVIIHG LHIHDCKPTG NAMVRSSPSH 240 FGWRTMADGD AISIFGSSHI WIDHNSLSHC ADGLVDAVMG STAITISNNH LTHHNEVMLL 300 GHSDSYTRDK QMQVTIAYNH FGEGLIQRMP RCRHGYFHVV NNDYTHWEMY AIGGSANPTI 360 NSQGNRYNAP VNPFAKEVTK RVETAASQWK SWNWRSEGDL LLNGAYFTPS GAGASASYAR 420 ASSLGAKSST MVGSMTANAG ALPCRRGSRC * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 4.0e-28 | 189 | 365 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 6.0e-73 | 182 | 367 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 5.0e-81 | 176 | 370 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACB12931.1 | 0 | 1 | 450 | 1 | 452 | pectate lyase 1-27 [Populus tremula x Populus tremuloides] |
| GenBank | ADD62392.1 | 0 | 32 | 450 | 29 | 445 | pectase lyase [Prunus persica] |
| DDBJ | BAF43573.1 | 0 | 32 | 450 | 9 | 425 | pectate lyase [Prunus persica] |
| RefSeq | XP_002297822.1 | 0 | 3 | 450 | 1 | 450 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304700.1 | 0 | 1 | 450 | 1 | 452 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 102 | 442 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 102 | 442 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 3e-17 | 171 | 367 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000000002 | 192 | 344 | 135 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pe9_B | 0.0000000000002 | 192 | 441 | 90 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
