| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_007544m |
| Family | GH28 |
| Protein Properties | Length: 450 Molecular Weight: 48562.2 Isoelectric Point: 6.8962 |
| Chromosome | Chromosome/Scaffold: 03175 Start: 123809 End: 128973 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 76 | 423 | 0 |
| RSGGTLLYIPPGVYLTGSFNLTSHMTLYLAKGAVIKATQDFSNWPLIAPLPSYGRGRERPGGRYMSFIHGDGLHDVVITGENGTIDGQGDVWWEMWRQRT LQFTRPNLVEIVNSRSIIISNVIFKNSPFWNIHPVYCSNVVIQFVTILAPPDSPNTDGIDPDSSTNVCIEDSFISTGDDLVAVKSGWDEYGIAYGRPSSG ITIRRVTGSSPFAGIAVGSETSGGVENVLAENINLYDMGVGIHVKTNIGRGGFIRNITISDVYMENVRKGIKIAGDVGDHPDDKFNPYALPVVKGITLKG VWGEKVQQPGSIQGLKDSPFTGICLSNINLHGVPGPRSTPWKCSDVSG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 450 Download |
| MKKSVSLLSF FLGVSVFVLF SSHFAVAGVV TCSGIVPMRY RNDNISITDF GGVGDGMTLN 60 TKAFREAIYR IQHLSRSGGT LLYIPPGVYL TGSFNLTSHM TLYLAKGAVI KATQDFSNWP 120 LIAPLPSYGR GRERPGGRYM SFIHGDGLHD VVITGENGTI DGQGDVWWEM WRQRTLQFTR 180 PNLVEIVNSR SIIISNVIFK NSPFWNIHPV YCSNVVIQFV TILAPPDSPN TDGIDPDSST 240 NVCIEDSFIS TGDDLVAVKS GWDEYGIAYG RPSSGITIRR VTGSSPFAGI AVGSETSGGV 300 ENVLAENINL YDMGVGIHVK TNIGRGGFIR NITISDVYME NVRKGIKIAG DVGDHPDDKF 360 NPYALPVVKG ITLKGVWGEK VQQPGSIQGL KDSPFTGICL SNINLHGVPG PRSTPWKCSD 420 VSGAALEVSP WPCSELTTTH QAAACSDHI* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 1.0e-20 | 45 | 421 | 400 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 2.0e-24 | 45 | 407 | 375 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 3.0e-25 | 42 | 348 | 313 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-29 | 142 | 421 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 3.0e-53 | 25 | 411 | 416 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC91250.1 | 0 | 2 | 446 | 3 | 441 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
| EMBL | CBI34471.1 | 0 | 10 | 449 | 8 | 447 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_194113.1 | 0 | 12 | 446 | 4 | 441 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002304552.1 | 0 | 38 | 448 | 1 | 411 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509949.1 | 0 | 15 | 449 | 14 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 5e-40 | 45 | 407 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 5e-40 | 45 | 407 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 5e-40 | 45 | 407 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 5e-40 | 45 | 407 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 7e-21 | 88 | 379 | 51 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
