| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_007568m |
| Family | PL1 |
| Protein Properties | Length: 449 Molecular Weight: 49233.5 Isoelectric Point: 8.0909 |
| Chromosome | Chromosome/Scaffold: 02421 Start: 33095 End: 36906 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 162 | 368 | 0 |
| IQDEPLWIVFKRDMVIQLKQELIMNSFKTIDGRGVNVHIANGACITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWVD HNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ GNRYNAP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 449 Download |
| MAVPSKRVCV FAAVLVVMFV GVLATVQNDG ISGVTRKEET EKLQTSKNSS MAASSGEEIE 60 AWKNEHAVDD PEEVVALVQM GIRNSTQRRR LGYFSCGTGN PIDDCWRCDP NWQKNRKRLA 120 ECGIGFGRNA IGGRDGRFYV VTDPNDDDPV NPKPGTLRHA VIQDEPLWIV FKRDMVIQLK 180 QELIMNSFKT IDGRGVNVHI ANGACITIQF VTNVIIHGLH IHDCKPTGNA MVRSSPSHYG 240 WRTMADGDAI SIFGSSHIWV DHNSLSHCAD GLVDAVMGST AITISNNHFT HHNEVILLGH 300 SDSYTRDKQM QVTIAFNHFG EGLIQRMPRC RHGYFHVVNN DYTHWEMYAI GGSANPTINS 360 QGNRYNAPAN PFAKEVTKRV ETSTGIWKNW NWRSEGDLLL NGAYFTPSGA GASASYARAS 420 SLGAKSSSMV GAITANAGAL PCRRGRQC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 3.0e-27 | 187 | 363 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 9.0e-72 | 180 | 365 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 4.0e-81 | 174 | 368 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACB12931.1 | 0 | 30 | 448 | 34 | 452 | pectate lyase 1-27 [Populus tremula x Populus tremuloides] |
| GenBank | ADD62392.1 | 0 | 31 | 448 | 30 | 445 | pectase lyase [Prunus persica] |
| DDBJ | BAF43573.1 | 0 | 17 | 448 | 1 | 425 | pectate lyase [Prunus persica] |
| RefSeq | XP_002297822.1 | 0 | 1 | 448 | 1 | 450 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304700.1 | 0 | 30 | 448 | 34 | 452 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 100 | 440 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 100 | 440 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-16 | 169 | 365 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_B | 0.00000000000002 | 190 | 439 | 90 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_A | 0.00000000000002 | 190 | 439 | 90 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
