| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_007737m |
| Family | PL1 |
| Protein Properties | Length: 444 Molecular Weight: 49237.6 Isoelectric Point: 8.1865 |
| Chromosome | Chromosome/Scaffold: 06825 Start: 184331 End: 188779 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 157 | 362 | 0 |
| IQDRPLWIVFKRDMVITLKQELIMNSFKTIDARGVNVHIANGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPTHYGWRTMADGDGISIFGSSHIWID HNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQ GNRYLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 444 Download |
| MAVSLRCFCI FSLMILVLFV NVKASTERSQ LKSRLEEKQL LQSSKNSSMA VDRSGDAWNE 60 HAVEDPEEVA SMVVESIHNS TARRNLGFFS CVTGNPIDDC WRCDPNWQRN RKRLADCGIG 120 FGRNAIGGRD GRYYVVTDPR DDDPVNPKPG TLRHAVIQDR PLWIVFKRDM VITLKQELIM 180 NSFKTIDARG VNVHIANGAC ITIQFITNVI IHGLHIHDCK PTGNAMVRSS PTHYGWRTMA 240 DGDGISIFGS SHIWIDHNSL SNCADGLIDA IMGSTAITIS NNYFTHHNEV MLLGHSDSYT 300 RDKQMQVTIA YNHFGEGLIQ RMPRCRHGYF HVVNNDYTHW EMYAIGGSAE PTINSQGNRY 360 LAPNNGFAKE VTKRVETANG VWKHWNWRSE GDLMLNGAYF TPSGAGASAS YARASSLGAK 420 SSSMVGAITS SAGALFCRRG HQC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 3.0e-27 | 182 | 358 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-70 | 175 | 360 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-81 | 169 | 364 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX88800.1 | 0 | 1 | 443 | 1 | 437 | ripening-related pectate lyase [Mangifera indica] |
| EMBL | CAN75298.1 | 0 | 1 | 443 | 1 | 445 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002265100.1 | 0 | 1 | 443 | 1 | 445 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002297822.1 | 0 | 1 | 443 | 1 | 450 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002521130.1 | 0 | 1 | 443 | 1 | 441 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 95 | 435 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 95 | 435 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 9e-17 | 164 | 362 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000000003 | 243 | 337 | 190 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pe9_B | 0.0000000000001 | 185 | 434 | 90 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
