| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_008164m |
| Family | GH28 |
| Protein Properties | Length: 429 Molecular Weight: 46704.6 Isoelectric Point: 5.3381 |
| Chromosome | Chromosome/Scaffold: 01551 Start: 2956829 End: 2959918 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 70 | 390 | 0 |
| DKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVLDPLPSYGRGIELPGKRYRSLINGYKLRDVVITGDNGTIDGQGSVWWDWFNSHS LNYSRPHLVEFIESERLVVSNLTFLNAPAYNIHPVYCNSSNNVCIEESIIEMGYDAIALKSGWDEYGISYDRATRNVHIRRVHLQSSAGSSIAFGSEMSG GISDVHVQKVHIYNSFSGIEFRTTKGRGGYIKGIYVSDVEMENVNIAFGAIDDHGLHPDSNFDPNALPILDQITLQNITGTNITIAGNFTGIQESPFTSI CLFNVSLLASASSNSWICSSV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 429 Download |
| MPVALLLLLA LRYAIGINGE ISSGQCDYKP SLNPRPHSVS ILEFGAVGDG KTLNTIAFQN 60 AIFYLKSFAD KGGAQLYVPP GKWLTGSFNL TSHLTLFLEK GAVILGSQNP SHWDVLDPLP 120 SYGRGIELPG KRYRSLINGY KLRDVVITGD NGTIDGQGSV WWDWFNSHSL NYSRPHLVEF 180 IESERLVVSN LTFLNAPAYN IHPVYCNSSN NVCIEESIIE MGYDAIALKS GWDEYGISYD 240 RATRNVHIRR VHLQSSAGSS IAFGSEMSGG ISDVHVQKVH IYNSFSGIEF RTTKGRGGYI 300 KGIYVSDVEM ENVNIAFGAI DDHGLHPDSN FDPNALPILD QITLQNITGT NITIAGNFTG 360 IQESPFTSIC LFNVSLLASA SSNSWICSSV IGSSESVFPE PCPELMSLYS NSSNCYTPLI 420 SYGESASL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam12708 | Pectate_lyase_3 | 1.0e-12 | 38 | 289 | 264 | + Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. | ||
| PLN03003 | PLN03003 | 2.0e-14 | 37 | 313 | 305 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-15 | 137 | 350 | 247 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 3.0e-16 | 36 | 353 | 360 | + polygalacturonase ADPG | ||
| COG5434 | PGU1 | 1.0e-41 | 39 | 366 | 396 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI22951.1 | 0 | 14 | 403 | 14 | 428 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273305.1 | 0 | 14 | 403 | 16 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002314352.1 | 0 | 14 | 411 | 14 | 435 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002328589.1 | 0 | 1 | 428 | 3 | 450 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516982.1 | 0 | 1 | 428 | 1 | 454 | Polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 4e-21 | 37 | 371 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 4e-21 | 37 | 371 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 4e-21 | 37 | 371 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 4e-21 | 37 | 371 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 0.0000000000008 | 18 | 158 | 136 | 273 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
