| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_008852m |
| Family | PL1 |
| Protein Properties | Length: 407 Molecular Weight: 45182.6 Isoelectric Point: 7.3416 |
| Chromosome | Chromosome/Scaffold: 03245 Start: 244986 End: 246612 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 120 | 325 | 0 |
| IQDEPLWIVFQRDMVIQLKQELVMNSFKTLDGRGASVHISGGPCITIHYATNIIIHGLHIHDCKQGGNGNIRDSPHHSGWWTQSDGDGISIFTSKHIWVD HCSLSNCHDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQ GNRFLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 407 Download |
| MSTATLSSLF LFFFFAIVTP HFVFSSPVPD PELVVQEVHR SINASRRNLA FLSCGTGNPI 60 DDCWRCDPNW ERNRQRLADC AIGFGKDAIG GRNGRIYVVT DSGDDDAVNP KPGTLRYAVI 120 QDEPLWIVFQ RDMVIQLKQE LVMNSFKTLD GRGASVHISG GPCITIHYAT NIIIHGLHIH 180 DCKQGGNGNI RDSPHHSGWW TQSDGDGISI FTSKHIWVDH CSLSNCHDGL IDAIHGSTAI 240 TISNNYFTHH DKVMLLGHSD SYTQDKNMQV TIAFNHFGEG LVQRMPRCRH GYFHVVNNDY 300 THWEMYAIGG SASPTINSQG NRFLAPNDRS KKEVTKHEDA PESEWRHWNW RSEGDLMMNG 360 AFFRQSGAGA SSSYARAASL SARPSSLVDS MTRTAGALGC RRGSRC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 5.0e-31 | 145 | 323 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-77 | 138 | 323 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-82 | 132 | 327 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF63756.1 | 0 | 26 | 406 | 18 | 398 | AF243475_1 pectate lyase [Vitis vinifera] |
| EMBL | CBI14899.1 | 0 | 20 | 406 | 17 | 403 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002268976.1 | 0 | 25 | 406 | 22 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002300069.1 | 0 | 8 | 406 | 5 | 403 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526952.1 | 0 | 3 | 406 | 2 | 396 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 58 | 398 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 58 | 398 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 5e-21 | 77 | 325 | 2 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_B | 0.000000000000002 | 171 | 397 | 115 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_A | 0.000000000000002 | 171 | 397 | 115 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
