| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_008855m |
| Family | PL1 |
| Protein Properties | Length: 407 Molecular Weight: 44645.3 Isoelectric Point: 7.285 |
| Chromosome | Chromosome/Scaffold: 04175 Start: 409715 End: 411655 |
| Description | Pectate lyase family protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 120 | 325 | 0 |
| IQEEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNAYVRDSPSHYGWRTISDGDGVSIFGGSHVWVD HCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDGYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYSHWEMYAIGGSADPTINSQ GNRFLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 407 Download |
| MKPMATPLSL LILLLLAVAP RFISSSPVQD PELVAEEVHR SINASRRNLG FLSCGTGNPI 60 DDCWRCDPNW ERNRQRLADC AIGFGKHAIG GRDGQIYVVT DSGNDDPVNP KPGTLRHAVI 120 QEEPLWIIFA RDMVIKLKEE LIMNSFKTID GRGASVHIAG GPCITIQYVT NIIIHGLNIH 180 DCKQGGNAYV RDSPSHYGWR TISDGDGVSI FGGSHVWVDH CSLSNCNDGL IDAIHGSTAI 240 TISNNYMTHH NKVMLLGHSD GYTQDKNMQV TIAFNHFGEG LVQRMPRCRH GYFHVVNNDY 300 SHWEMYAIGG SADPTINSQG NRFLAPNDRF NKEVTKHEDA PESEWRHWNW RSEGDLLMNG 360 AFFTPSGAGA SSSYARASSL GARPSSLVSS ITAGSGALFC KKGKRC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-27 | 145 | 323 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-72 | 138 | 323 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 8.0e-81 | 132 | 327 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK94358.1 | 0 | 19 | 406 | 15 | 402 | unknown [Populus trichocarpa] |
| RefSeq | XP_002285340.1 | 0 | 24 | 406 | 21 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311747.1 | 0 | 19 | 406 | 15 | 402 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002322215.1 | 0 | 4 | 406 | 1 | 403 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515037.1 | 0 | 4 | 406 | 1 | 404 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 58 | 367 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 58 | 367 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 5e-18 | 115 | 324 | 38 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1bn8_A | 0.00000000000005 | 148 | 300 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |
| PDB | 1pe9_B | 0.00000000000007 | 187 | 398 | 120 | 361 | A Chain A, Bacillus Subtilis Pectate Lyase |
