| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_008891m |
| Family | AA7 |
| Protein Properties | Length: 406 Molecular Weight: 45600.9 Isoelectric Point: 7.5508 |
| Chromosome | Chromosome/Scaffold: 07478 Start: 771914 End: 773428 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 3 | 173 | 0 |
| NLRSIDVDVKNESAWVQTGATLGEVYYRIWEKSKAYGFPAGVCPTVGVGGHISGGGYGNMLRKYGLAVDNVLDAQIVDANGKLLDRKAMGEDLFWAIRGG GGGSFGVVISYKIMLVPVPETVTVFRVERTLDENATDVVFKWQLVAPKTDNNLFMRMLLQPVTSRTNRTQR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 406 Download |
| MFNLRSIDVD VKNESAWVQT GATLGEVYYR IWEKSKAYGF PAGVCPTVGV GGHISGGGYG 60 NMLRKYGLAV DNVLDAQIVD ANGKLLDRKA MGEDLFWAIR GGGGGSFGVV ISYKIMLVPV 120 PETVTVFRVE RTLDENATDV VFKWQLVAPK TDNNLFMRML LQPVTSRTNR TQRTIRASIV 180 ALYLGNADTL VSLLGNEFPE LGLKKEVCNE TSWIQSVLWW ANDDIGTSPE VLLDRDLDSA 240 NFLKRKSDYV ETPISKDKLN WIWQRMIEVG KTGLVFNPYG GRMSEIPETD TPFPHRKGNL 300 FKIQYSVNWE DAGTTAENEF LTQARKLHNY MTPFVSKNPR RAFLNYRDLD IGVMEAGKNS 360 YEEGSIYGSK YFHGNFDRLV KVKTAVDPEN FFRNEQSIPT LPTKA* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG0277 | GlcD | 4.0e-8 | 7 | 146 | 147 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam01565 | FAD_binding_4 | 2.0e-10 | 5 | 87 | 83 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| pfam08031 | BBE | 5.0e-16 | 342 | 399 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN81650.1 | 0 | 1 | 401 | 136 | 531 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002299028.1 | 0 | 1 | 405 | 134 | 536 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002317087.1 | 0 | 1 | 405 | 134 | 535 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002523157.1 | 0 | 1 | 405 | 138 | 539 | Reticuline oxidase precursor, putative [Ricinus communis] |
| RefSeq | XP_002523158.1 | 0 | 1 | 405 | 138 | 539 | Reticuline oxidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3tsj_B | 0 | 4 | 401 | 109 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 4 | 401 | 109 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsh_A | 0 | 4 | 401 | 109 | 496 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
| PDB | 4dns_B | 0 | 1 | 401 | 108 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 1 | 401 | 108 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DT505228 | 300 | 107 | 406 | 0 |
| HO781153 | 351 | 61 | 406 | 0 |
| FF381399 | 230 | 175 | 404 | 0 |
| DY275452 | 395 | 12 | 399 | 0 |
| DY275452 | 93 | 7 | 96 | 0.23 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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