| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_009002m |
| Family | PL1 |
| Protein Properties | Length: 402 Molecular Weight: 44035.4 Isoelectric Point: 7.1286 |
| Chromosome | Chromosome/Scaffold: 10899 Start: 81479 End: 83212 |
| Description | Pectate lyase family protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 115 | 320 | 0 |
| IQDEPLWIIFARDMTIQLKEELIMNSFKTIDGRGASIHIAGGPCITIQYVTNIIIHGLHIHDCKQGGNAYVRNSPRHYGWRTISDGDGVSIFGGSHVWVD HNSLSNCNDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDSFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQ GNRFVA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 402 Download |
| MALTHLFLFS LLTIPSLISS SPVQDPELVI HQVNRAINAS RRNLGYLSCG TGNPIDDCWR 60 CDPNWEKNRQ RLADCAIGFG KNAIGGRDGR IYVVTDSGDD DPVNPKPGTL RHAVIQDEPL 120 WIIFARDMTI QLKEELIMNS FKTIDGRGAS IHIAGGPCIT IQYVTNIIIH GLHIHDCKQG 180 GNAYVRNSPR HYGWRTISDG DGVSIFGGSH VWVDHNSLSN CNDGLVDAIH GSTAITISNN 240 FMTHHDKVML LGHSDSFTQD KNMQVTIAFN HFGEGLVQRM PRCRHGYFHV VNNDYTHWEM 300 YAIGGSAAPT INSQGNRFVA PDDRFNKEVT KYEDAPESEW KNWNWRSEGD LMVNGAFFTA 360 SGAGASSSYA KASSLSARPS SLVGTITVGA GALSCKKGSR C* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-26 | 140 | 318 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 4.0e-71 | 133 | 318 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-77 | 127 | 322 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ADB90475.1 | 0 | 24 | 401 | 34 | 411 | pectate lyase [Gossypium herbaceum] |
| GenBank | ADB90476.1 | 0 | 24 | 401 | 34 | 411 | pectate lyase [Gossypium raimondii] |
| GenBank | ADB90479.1 | 0 | 24 | 401 | 34 | 411 | pectate lyase [Gossypium barbadense] |
| RefSeq | XP_002318694.1 | 0 | 15 | 401 | 17 | 403 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002322215.1 | 0 | 15 | 401 | 17 | 403 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 53 | 394 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 53 | 394 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-18 | 122 | 319 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.000000000000006 | 125 | 318 | 114 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pe9_B | 0.00000000000004 | 207 | 392 | 151 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
