| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_009041m |
| Family | PL1 |
| Protein Properties | Length: 401 Molecular Weight: 43716.2 Isoelectric Point: 7.435 |
| Chromosome | Chromosome/Scaffold: 12794 Start: 230894 End: 232744 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 114 | 319 | 0 |
| IQDDPLWIIFARDMTIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGLHIHDCKPGGNAYVRDSPRHYGWRTVSDGDGVSIFGGSHIWVD HNSLSNCNDGLVDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQ GNRFVA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 401 Download |
| MGLLLFLFSV LAISSLVSSS PVQDPELVVN QVHRAINGSR RNLGYLSCGT GNPIDDCWRC 60 DPNWEKNRQR LADCAIGFGK KAIGGRDGKI YVVTDSSDDD AVNPKPGTLR HAVIQDDPLW 120 IIFARDMTIK LKEELIMNSF KTIDGRGASV HIAGGPCITI QFVTNIIIHG LHIHDCKPGG 180 NAYVRDSPRH YGWRTVSDGD GVSIFGGSHI WVDHNSLSNC NDGLVDAIHG STAITISNNY 240 MTHHDKVMLL GHSDSYTQDK NMQVTIAFNH FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY 300 AIGGSAAPTI NSQGNRFVAP DIRFSKEVTK HEDAPESEWK NWNWRSEGDL LVNGAFFTAS 360 GAGASSSYAK ASSLSARPSS LVGSITVGSG ALNCKKGVRC * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-27 | 139 | 317 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-72 | 132 | 317 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 9.0e-81 | 126 | 321 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABV32549.1 | 0 | 15 | 400 | 25 | 413 | pectase lyase [Prunus persica] |
| GenBank | ADB90475.1 | 0 | 23 | 400 | 34 | 411 | pectate lyase [Gossypium herbaceum] |
| GenBank | ADB90476.1 | 0 | 23 | 400 | 34 | 411 | pectate lyase [Gossypium raimondii] |
| RefSeq | XP_002318694.1 | 0 | 15 | 400 | 18 | 403 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002322215.1 | 0 | 15 | 400 | 18 | 403 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 52 | 361 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 52 | 361 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 8e-20 | 71 | 318 | 2 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_B | 9e-16 | 130 | 392 | 78 | 361 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_A | 9e-16 | 130 | 392 | 78 | 361 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
