| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_010014m |
| Family | PL1 |
| Protein Properties | Length: 371 Molecular Weight: 41328.9 Isoelectric Point: 8.3686 |
| Chromosome | Chromosome/Scaffold: 00687 Start: 71150 End: 76690 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 103 | 282 | 0 |
| IVFEVSGTIHLRSYLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIVCNLELEGGKGPDADGIQIKPKSKHIWIDRCSLRDFDDGLIDITRESTDVTVSR CRFAQHNKTMLIGADPSHVTDRCIRVTIHHCFFDGTRQRHPRVRFAKVHIYNNYMRNWDVYAVCASVESQIYSQCNIFEA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 371 Download |
| MGNSHGHRHN GRLSSETPAS PPFIYQQSPQ VPPPLNQTPN TMVTCLPYAH VDSSLRALAC 60 QAEGFGRLAI GGLHGALYKV TSLADDGPGS LRYGCRQKEP LWIVFEVSGT IHLRSYLSVS 120 SYKTIDGRGQ RVKLTGKGLR LKECEHVIVC NLELEGGKGP DADGIQIKPK SKHIWIDRCS 180 LRDFDDGLID ITRESTDVTV SRCRFAQHNK TMLIGADPSH VTDRCIRVTI HHCFFDGTRQ 240 RHPRVRFAKV HIYNNYMRNW DVYAVCASVE SQIYSQCNIF EAGNKKVAFK YHTEKAADKE 300 EPGSGYIKSE GDLFIAGTQS GLKSGIGESC VFHPSEYYPT WTVEPPTEIL KQVLQHFSGW 360 QCVPRPPDTK * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 9.0e-38 | 98 | 280 | 203 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 3.0e-46 | 100 | 353 | 273 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 2.0e-68 | 117 | 284 | 180 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK93648.1 | 0 | 1 | 368 | 1 | 380 | unknown [Populus trichocarpa] |
| GenBank | ABK96132.1 | 0 | 1 | 368 | 1 | 383 | unknown [Populus trichocarpa] |
| GenBank | ABV60263.1 | 0 | 14 | 369 | 33 | 392 | pectate lyase 1 [Hevea brasiliensis] |
| RefSeq | XP_002309435.1 | 0 | 42 | 368 | 1 | 327 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002323433.1 | 0 | 42 | 368 | 1 | 327 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 4.00001e-41 | 52 | 338 | 15 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 4.00001e-41 | 52 | 338 | 15 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 9e-26 | 114 | 280 | 125 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 7e-24 | 104 | 280 | 49 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 2e-23 | 124 | 356 | 82 | 319 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY289690 | 316 | 34 | 345 | 0 |
| DY277275 | 310 | 46 | 355 | 0 |
| DY275282 | 329 | 43 | 369 | 0 |
| JG177860 | 304 | 63 | 366 | 0 |
| DY271752 | 280 | 34 | 313 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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