| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_020879m |
| Family | GH28 |
| Protein Properties | Length: 299 Molecular Weight: 32090.8 Isoelectric Point: 7.4704 |
| Chromosome | Chromosome/Scaffold: 06040 Start: 5936 End: 7034 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 26 | 255 | 0 |
| ARKEACAAAGSSKILIPAGTFLAGIVNITDPCKGAIEVEVQGTMQAPSDLVGDGWFNFNHIDQFTLSGKGTLDGQGEVAWKGVSCDKDLKNCKKHPMNIR FNFITKGLVRDITFLNSKYFHVNVLGYDHFTFEGFIVSTPENSLNIDGIHIGRSKGVTISNAKIGTGDDCISIGDGTENLKITKVACGPGHGISIGSLGK YENEDPVFGITVSDCTLTGITNGVRIKTWP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 299 Download |
| PAVFDITKFV AAPDGKADAS QAIADARKEA CAAAGSSKIL IPAGTFLAGI VNITDPCKGA 60 IEVEVQGTMQ APSDLVGDGW FNFNHIDQFT LSGKGTLDGQ GEVAWKGVSC DKDLKNCKKH 120 PMNIRFNFIT KGLVRDITFL NSKYFHVNVL GYDHFTFEGF IVSTPENSLN IDGIHIGRSK 180 GVTISNAKIG TGDDCISIGD GTENLKITKV ACGPGHGISI GSLGKYENED PVFGITVSDC 240 TLTGITNGVR IKTWPALLGN PEIFATQLRS EKIKSLLISF PRIRILHLIQ KMDMRLTY* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 3.0e-50 | 1 | 278 | 287 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-56 | 3 | 283 | 289 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 3.0e-59 | 3 | 254 | 256 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-77 | 31 | 256 | 228 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 3.0e-82 | 4 | 254 | 255 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89477.1 | 0 | 3 | 259 | 30 | 284 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 3 | 259 | 30 | 284 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89479.1 | 0 | 3 | 259 | 30 | 284 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002329175.1 | 0 | 3 | 259 | 30 | 284 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002333303.1 | 0 | 3 | 259 | 30 | 284 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-18 | 93 | 253 | 115 | 283 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.00000000003 | 170 | 253 | 152 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000003 | 170 | 253 | 152 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.00000000003 | 170 | 253 | 152 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.00000000003 | 170 | 253 | 152 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FC885548 | 284 | 4 | 281 | 0 |
| EC987202 | 282 | 4 | 281 | 0 |
| DY292761 | 284 | 4 | 281 | 0 |
| EC941822 | 274 | 4 | 273 | 0 |
| CU617067 | 253 | 6 | 255 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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